Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8 158 1e-33 >seq8 Length=958091 Score = 158 bits (174), Expect = 1e-33 Identities = 374/563 (66%), Gaps = 9/563 (2%) Strand=Plus/Minus Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 || ||||| |||||||| || | || || || || || || | ||| ||| ||| || Sbjct 469676 AAACACGCGAAGTCGGTGTGCATGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTG 469617 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | || || | || || || ||||||||||| || || || || || ||||| || Sbjct 469616 AGGCCAGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGATCCAGAGAAG 469557 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 || ||||| ||||| || || || || | | ||| ||||| || || || | || Sbjct 469556 AAGATACCCTCCACAGCGGCGAAGGCGATGAGACGCTCGGCGAA---CGCAGACTCCTTG 469500 Query 93269 CTG---ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 | ||||| | |||||| ||||| || ||||| || ||||| | || ||||| Sbjct 469499 TCGGAAATCCAGCGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTGTCGATG 469440 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 |||| || |||| || |||| | | || ||||| ||||| || | || || Sbjct 469439 GCGTCGAAGAGGTGCTCGCGCTGAGCGGGGTCCTTGATGTAGGTATCAATGAGGAGCGAG 469380 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 || | || || |||| |||||||| ||| ||||| |||||||| || | |||||| Sbjct 469379 TAGGTCTCCGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCC 469320 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 | ||| || || | ||||| ||||| ||||| || || ||||| || || || || Sbjct 469319 GCTGCCTGAACCTCGTTGGAAAACCTCTCGACGAGGTTCTCGTTGACGATGCCGTCCGAC 469260 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC---TTA 93562 || || || || || | | ||| || || | | |||||| || | ||| || Sbjct 469259 GCGGCGAAGAATGCGAGGACGTGCGAAATGAAGTATCGCTCATCGTCGGTGAGCTTGTTG 469200 Query 93563 TCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622 | ||| ||| ||||| || || | || | || || | ||||| || || || || Sbjct 469199 TTCCAGTCGTGCAGATCCTTGGACAAGTCCATCTCCTCTGCCGTCCAGAAGGACGCCTCA 469140 Query 93623 GCTTTTTTGTACATATCCCATAT 93645 || || |||||||| | ||| || Sbjct 469139 GCCTTCTTGTACATCTGCCAGAT 469117 Score = 141 bits (156), Expect = 1e-28 Identities = 370/561 (66%), Gaps = 9/561 (2%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 |||||| ||||||||||| | || ||||| || || || | ||| ||| ||| || | Sbjct 467188 GCACGCGAAGTCGGTATGCATGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAG 467247 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 || || | || || || ||||||||||| || || | || || || || || || Sbjct 467248 GCCGGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAACGAGCCGGAGAAGAA 467307 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA--TTACTG 93268 | || || ||||| || || || || | || || |||||| || ||| | | Sbjct 467308 GACGCCCTCGACGGCGGCGAACGCGACGAGCCGCTCCGCAAAA---GCAGAACGCTCGTC 467364 Query 93269 C-TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 | |||||| | ||||| ||||| || ||||| || || |||| || ||||| || Sbjct 467365 CGCGATCCACCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGTATGGTGTCGATGGC 467424 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATA 93387 || || ||| | | |||||| | | || || ||||| || ||||| | || || || Sbjct 467425 GTCGAAGAGGAAGGCGCGCTCGGCGGGGTCGCGGATGTAGGTGTCGATGAGGAGCGAGTA 467484 Query 93388 CATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 | | || | || || ||||| || |||||||| || || || || | || |||| Sbjct 467485 CGTCTCGGCGTGCACGTTCTCGATCATGATTTGGAAGCCATAAAAGCAGCGCGCCTCCGC 467544 Query 93448 GATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 | |||||| || | || || | || ||||| ||||| || || || ||||| || || Sbjct 467545 GGCCTGCACCTCGTTGGAGAAGCGTTCCACGAGGTTTTCGTTCACGATGCCATCCGAGGC 467604 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT---ATC 93564 || ||||| || | | | || || || ||| | || || ||||| || Sbjct 467605 GGCGAAAAAGGCGAGCACGTAGGAGATGAAGTGCCGCTCGTTGTCGTTTAGCTTGCCATT 467664 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| || || || | || || | | || ||||| |||||||| || |||| || Sbjct 467665 CCAGTCCATAAGGTCATACGAGAGGTTAATCTCCTCGACTGTCCAAAAGGACGCTTGGGC 467724 Query 93625 TTTTTTGTACATATCCCATAT 93645 | |||||||| | |||||| Sbjct 467725 AGTCTTGTACATCTGCCATAT 467745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556858670007440