Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq39 122 2e-22 seq8 107 4e-18 seq111 95.1 2e-14 >seq39 Length=280335 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || |||||||||||||||||||| |||||| |||| || || || | ||||| Sbjct 251770 CTTTCCGGTGGTTGGAAGATGAAGCTCGCCCTCGCTCGTGCGATGCTCTTCAAGGCCGAC 251711 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 |||| || || |||||||| ||||||||| ||||| | |||||| || ||||| | | Sbjct 251710 ATCCTGCTCCTCGATGAGCCCACCAACCACTTGGACGTCGTCAACGTTGCGTGGCTCGAG 251651 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| ||||| || | | | ||| |||| ||||| |||||||| |||||| Sbjct 251650 AACTACCTCACCAGCCTCACCCACTGCACGTCCATCATCGTCTCGCACGACTCCGGCTTC 251591 Query 279885 CT 279886 || Sbjct 251590 CT 251589 Score = 107 bits (118), Expect = 4e-18 Identities = 139/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | || ||||| ||| | || ||||| ||||| |||| |||| | |||||| | Sbjct 251299 GTCCTCGGTCCCAACGGTTCCGGCAAGTCCACCCTTGTCAAGCTCCTCATTGGCGATCTC 251240 Query 280233 CAGGCCA-CTGAGG-GGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| | | || ||| | | |||||||| |||||| || || | ||||||||| Sbjct 251239 GAGCCCAACCGTGGCGGTGAGATCTGGAAGCACCCCAACTTGGTCATCGGTTACGTCGCG 251180 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||| |||||||||||||| |||||||| |||| ||| || | | ||||| | Sbjct 251179 CAGCACGCGTTCCACCACATCGACAACCACCTCGACAAGACCCCGCTCGAGTACATGTTG 251120 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 251119 TGGCGTTA 251112 Score = 100 bits (110), Expect = 6e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| ||||| |||| | ||||||||||| || |||| |||||| ||||| ||| Sbjct 252179 GGTGAGGACCTGTGCAACTGCCAGTTCTCGCTCGCGTACGGTGCGAAGATCCTGCTCAAC 252120 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | || ||| | ||||||||||| |||| || |||||| ||||| ||| || | Sbjct 252119 ACCGCCTCCCTGCGCCTCAAGCGTGGCCACCGCTACGGTCTCTGCGGTCGCAACGGTACC 252060 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGG 279499 || ||| || || ||||| || ||| | ||||| Sbjct 252059 GGCAAGTCGACGCTCATGCGTGCGATTACCAACGG 252025 >seq8 Length=958091 Score = 107 bits (118), Expect = 4e-18 Identities = 349/537 (65%), Gaps = 9/537 (2%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||||| ||||| ||||| ||||| ||||||||| | ||||||||||||| || Sbjct 469659 GTGCATGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCAGGCATCAAGCC 469600 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| ||||||||||||| | | |||||||||||||| | | |||||| ||| Sbjct 469599 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGATCCAGAGAAGAAGATACCCTCCACAGC 469540 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAAC---GACTTGTCCTGCGACAAGAACTTCTGTGC 252020 | | || | || ||||| || ||| |||| | | || | | | || Sbjct 469539 GGCGAAGGCGATGAGACGCTCGGCGAACGCAGACTCCTTGTCGGAAATCCAGCGAAGAGC 469480 Query 252021 CCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTC-C 252079 ||| | |||||||| | || || || ||||| || || ||||| | | || | Sbjct 469479 CCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTGTCGATGGCGTCGAAGAG-GTGCTCGC 469421 Query 252080 GCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGG 252139 ||| || ||||| |||| | ||||| ||||| ||||| ||||||| |||||| Sbjct 469420 GCTGAGCGGGGTCCTTGATGTAGGTATCAATGAGGAGCGAGTAGGTCTCCGAGTGGATGT 469361 Query 252140 ATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGG 252199 || | | |||||| | | ||||| ||||| | | || || ||| Sbjct 469360 TCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCCGCTGCCTGAACCTCGTTGG 469301 Query 252200 AAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAA 252259 |||| | | | | |||||| | || ||||| || | || ||||| | || | Sbjct 469300 AAAACCTCTCGACGAGGTTCTCGTTGACGATGCCGTCCGACGCGGCGAAGAATGCGAGGA 469241 Query 252260 TGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCT 252319 | | ||||||| |||||||||||| ||||||||| ||||||| | |||| Sbjct 469240 CGTGCGAAATGAAGTATCGCTCATCGTCGGTGAGCTTGTTGTTCCAGTCGTGCAGATCCT 469181 Query 252320 GATTCAGAGGAACTTCT--TCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | | | | | ||| || |||||||||| | | | | |||||||||||||| Sbjct 469180 --TGGACAAGTCCATCTCCTCTGCCGTCCAGAAGGACGCCTCAGCCTTCTTGTACAT 469126 Score = 95.1 bits (104), Expect = 2e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 251545 TATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATG 251604 || || || ||||| |||||||| || | |||||||| || ||||| | |||||| Sbjct 470010 TAGTCCGAGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATG 469951 Query 251605 AAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGG 251664 || ||||||||||| ||| | ||||| ||||| ||| || || |||| || ||| Sbjct 469950 AAATCGAAGGGGTTCGTGACGTTGTAGTGCTTCTCGCCGCCGAGAGCGACGAGGAGGCGA 469891 Query 251665 TCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 || || || ||||| | || || | ||| || | ||||||||||| || Sbjct 469890 TCCGCAACGAACTCGATGTATTGGCACATGAGCTTCGAGTTCATGCCGAT 469841 >seq111 Length=49823 Score = 95.1 bits (104), Expect = 2e-14 Identities = 220/332 (66%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 218674 GGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATT 218733 |||||||| ||||| ||||| | |||||| ||||||||| ||| || || |||| Sbjct 12076 GGTTATGTTTCCGAGATTTCCGCCTACCACCACGGTGAGGCAAGTTTGATGGCCACCATC 12017 Query 218734 GTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGT 218793 | | | ||||||||||| || || || |||||||||||| | || | || |||||| Sbjct 12016 ATCAACCTCGCACAGGACTACGTCGGAAGCAACAACATGAACCTCCTCATGCCGAACGGT 11957 Query 218794 CAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACA 218853 || || ||| ||||| ||||| || || || | || | ||||||| || Sbjct 11956 CAATTCGGTACTCGTGACCAAGGTGGTAAAGACCACGCCGCGGCTCGTTATATCTACACC 11897 Query 218854 AAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTAT 218913 || | | || || | ||| | ||| | | | || || || | | || | | ||| Sbjct 11896 GAGCTCGCCCCGGTCATCCGCAACGTGATGCACCCCGCGGACGACGCGATCTTGACGTAC 11837 Query 218914 CTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTG 218973 | ||||||| || ||| | |||||||||| ||| |||| | || ||| | | Sbjct 11836 CAGCAGGACGACGGCCGGTCGGTAGAGCCCGAGTTCTATATGCCCGTCATCCCGCTCGTC 11777 Query 218974 CTCGTAAATGGTGCCAATGGTATCGGGACAGG 219005 | || || || || | |||||||| || || Sbjct 11776 TTGGTCAACGGCGCTGAAGGTATCGGCACTGG 11745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027832770237346