Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq8 372 6e-98 seq2 178 2e-39 >seq8 Length=958091 Score = 372 bits (412), Expect = 6e-98 Identities = 526/730 (72%), Gaps = 23/730 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| ||||||||||| || ||||| || || || ||||| | | ||| Sbjct 467619 CTCGCCTTTTTCGCCGCCTCGGATGGCATCGTGAACGAAAACCTCGTGGAACGCTTCTCC 467560 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || ||||||||| | |||||||||||||| || |||||||| || || |||||| Sbjct 467559 AACGAGGTGCAGGCCGCGGAGGCGCGCTGCTTTTATGGCTTCCAAATCATGATCGAGAAC 467500 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 |||||| | ||| |||| | || || |||| ||||||| || |||| |||||| Sbjct 467499 GTGCACGCCGAGACGTACTCGCTCCTCATCGACACCTACATCCGCGACCCCGCCGAGCGC 467440 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | || ||| | ||||| || || || |||||||||||||||||||| |||||||| Sbjct 467439 GCCTTCCTCTTCGACGCCATCGACACCATACCCTGCATCAAGAAGAAGGCCGACTGGGCC 467380 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGC-------GAGAGGCTGGTAGCCTT 42715 ||| ||||||| | |||| | ||||| || ||| |||| || || || Sbjct 467379 CTCCGGTGGATCGCG------GACG-AGCGTTCTGCTTTTGCGGAGCGGCTCGTCGCGTT 467327 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 |||||||||||||| |||||||||| ||| | |||||| ||||||||||||||||| | Sbjct 467326 CGCCGCCGTCGAGGGCGTCTTCTTCTCCGGCTCGTTCGCCGCCATCTTCTGGCTCAAGAA 467267 Query 42776 GAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | | | |||||||| ||||| ||||| ||||| |||||| | | |||||||| | Sbjct 467266 GCGCGGGCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCAT 467207 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGA 42895 ||||| ||||| || |||||||| ||| || || | ||| || | | | Sbjct 467206 GCATACCGACTTCGCGTGCCTCCTCTTCCACCACCTCCGCCGGCGGCCGCAC-CCCCGCC 467148 Query 42896 GCG-GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 ||| | |||| |||| || | |||||||| |||||||||||||||||||||||| || Sbjct 467147 GCGTGCTCCG---CATCGTCGCCGAGGCCGTCGAGATCGAGAAGGAGTTCCTCACGGAGG 467091 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAAC-CACGACCTCATGTGCAAGTACATCCAGTAC 43013 |||| || || || || ||||||||||| | || || |||||| |||||||| ||| | Sbjct 467090 CGCTCCCGGTCTCGCTCATCGGCATGAACGCGCG-GCTGATGTGCCAGTACATCGAGTTC 467032 Query 43014 GTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCC 43072 ||||| |||| || || || | ||| || | | |||| | || || ||| Sbjct 467031 GTCGCGGACCGCCTGCTCGTCGCGCTCGGGAACGAGAAG-CACTACCGCGCGGCGAACCC 466973 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 || ||||| ||||| | |||||| | |||||||| ||||| |||||||||||||| Sbjct 466972 GTTTGACTTCATGGACATGATCTCGCTCACCGGCAAGACGAACTTCTTCGAGAAGCGCGT 466913 Query 43133 CGCCGACTAC 43142 |||| ||| Sbjct 466912 GTCCGAGTAC 466903 Score = 259 bits (286), Expect = 9e-64 Identities = 459/664 (69%), Gaps = 28/664 (4%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| || |||||||| ||| || Sbjct 469117 ATCTGGCAGATGTACAAGAAGGCTGAGGCGTCCTTCTGGACGGCAGAGGAGATGGACTTG 469176 Query 42360 GCCAAGGACACGGCCGGCTGGGAG-------TCACTGTCTGAGAACGAAAAGTTTTTCCT 42412 ||||||| | || |||| | |||| | | || ||| | | || | Sbjct 469177 TCCAAGGATCTGCACGACTGGAACAACAAGCTCACCGACGATGAGCGATACTTCATTTCG 469236 Query 42413 CAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCAC 42472 || | | || || ||||||||||| || |||||||| ||||| |||||||| | | Sbjct 469237 CA----CGTCCTCGCATTCTTCGCCGCGTCGGACGGCATCGTCAACGAGAACCTCGTCGA 469292 Query 42473 CAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGC 42532 ||||| || ||||| ||| || |||||||||||||||||||||||||| Sbjct 469293 GAGGTTTTCCAACGAGGTTCAGGCAGCGGAAGCGCGCTGCTTCTACGGCTTCCAGATTAT 469352 Query 42533 CATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGA 42589 || |||||| | ||||| ||| ||| | || |||| | || |||||| ||| Sbjct 469353 GATGGAGAACATCCACTCGGAGACCTACTCG---CTCCTCATTGATACCTACATCAAGGA 469409 Query 42590 TCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAA 42649 |||| |||| | || ||| | ||||| || || || || |||||||||||||| Sbjct 469410 CCCCGCTCAGCGCGAGCACCTCTTCGACGCCATCGACACCATTCCTTGCATCAAGAAGAA 469469 Query 42650 GGCGGACTGGGCGCTCAACTGGAT---CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCT 42706 ||| |||||||| || |||||| ||| | || | |||||| |||| | || Sbjct 469470 GGCCGACTGGGCTCTTCGCTGGATTTCCGACAAG---GAGTCTGCGTTCGCCGAGCGTCT 469526 Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 | ||||| |||| || ||||| ||||||||||| || ||||||||||||||||||| Sbjct 469527 CATCGCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGATCCTTCGCCTCCATCTTCTG 469586 Query 42767 GCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 ||||||| || | | |||||| || ||||| ||||| ||||| |||||| | | || Sbjct 469587 GCTCAAGAAGCGTGGCTTGATGCCTGGCCTCACGTTCTCCAACGAGCTCATCTCCCGCGA 469646 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 ||||| |||| | ||||| || || | || ||| ||||| |||| | | | | Sbjct 469647 TGAGGGCATGCACACCGACTTCGCGTGTTTGCTCTTC---AGCCATCTCAAG-AGGCGTC 469702 Query 42887 CTC-GAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCC 42945 ||| ||| |||| ||||| |||||| || ||||| ||| ||||||||| Sbjct 469703 CTCATCCCGAGATCGTCCTCCAAATCATTCAGGAGGCGGTCGAGATTGAGCAGGAGTTCC 469762 Query 42946 TCAC 42949 |||| Sbjct 469763 TCAC 469766 Score = 89.7 bits (98), Expect = 1e-12 Identities = 125/176 (71%), Gaps = 12/176 (7%) Strand=Plus/Plus Query 42973 TCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGT 43032 ||||||||||| | ||||||||| | |||||| ||| ||| || || | ||||| Sbjct 469842 TCGGCATGAACTCGAAGCTCATGTGCCAATACATCGAGTTCGTTGCGGATCGCCTCCTCG 469901 Query 43033 GCCAGATGGGTCTCAGCCGC------CTCTACAACACGCCGTGCCCCTTCGACTTTATGG 43086 | | |||| || || | ||||||| || ||||||||| || |||| Sbjct 469902 TC------GCTCTCGGCGGCGAGAAGCACTACAACGTCACGAACCCCTTCGATTTCATGG 469955 Query 43087 AGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 | | |||||| | |||||||||||||||| ||||||||||| ||| | |||||| Sbjct 469956 ACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTCTCGGACTAC 470011 >seq2 Length=1603695 Score = 178 bits (196), Expect = 2e-39 Identities = 618/973 (64%), Gaps = 95/973 (10%) Strand=Plus/Minus Query 243878 TTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAGGTCC 243937 ||||| ||||| |||| || ||| | | || || ||||| | | | || | | Sbjct 1473308 TTGAGCGACTGCGACTGGCAGATGAACGCTCCACGATCCGCGGCGAGGTCAAGGACCTTC 1473249 Query 243938 TTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCG 243997 ||||| || ||||| | | ||||||||||| | ||||| || ||||||| ||| Sbjct 1473248 TTCTGCGAGATCTCCCAAACGGTCTTGTAGATCGCCTTGACGTCGTCGGGGATGATGTCG 1473189 Query 243998 ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGG 244057 ||||||||||||||||| |||| | |||||| | | | ||||| |||||||| ||| Sbjct 1473188 ATGTTCTGCACCGAGCCGTTGTTGGCGATGATCATGTTCTTCATGTCGTCGTTCCAGAGG 1473129 Query 244058 CCCAAGCGCTCCAGCGCCTCGACCAGGTGCCT---GTTCACCACCTGAAACTCTCCCGAC 244114 || | |||| | |||| || ||| | ||| ||||| |||||||| | Sbjct 1473128 CCAA---GCTCGACGAGCTCGCGAAGCAGCCATGGGCACACGACCTGGAACTCTCCGGCG 1473072 Query 244115 AGCACGCGGCGCTGGTAGAGGTTGCTGCT------------------------------- 244143 || || |||||| ||||| |||||| | Sbjct 1473071 AGGACACGGCGCGTGTAGATGTTGCTACATAGGCGGTGAGGGATTGTACGGACCTCATGA 1473012 Query 244144 GAGC-------------------GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCG 244184 |||| ||||||| || ||| ||||||||| ||||| | Sbjct 1473011 GAGCAGATGCTTACCTCGTATAAGGCTCGAAGCACTCATTGTTGCCCAAGATCTGACTGG 1472952 Query 244185 TGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGA--T 244242 || ||||| ||||| |||| || ||||| |||||| | |||||| | | | Sbjct 1472951 TGGAGGCAGTAGGCATCGGCGCGACGAGCAGCGAGTTCCTGAGACCGTGCTGCGCCACCT 1472892 Query 244243 GCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCG-AGAGGTCCTCGCGTTTGAGGCCCC 244301 || || |||| | ||||||||| | | ||| || |||| | ||||| Sbjct 1472891 TCGCCTTCA-AGCTGGC-CCAGTCCCAGAGGTCCGTAGGGGTC----------ACGCCCC 1472844 Query 244302 ACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGAC 244361 | | ||| |||| ||| |||| | |||| ||||||| ||| ||| ||||| || Sbjct 1472843 AGAGGTCGTACTGAAGCTTGCCCTCAGAGGCGGGACTGCCCTTGTACGTCTCGTAGGTAC 1472784 Query 244362 CGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGA 244421 ||| |||| |||| || |||||| | |||| || |||| |||||||||||| |||| Sbjct 1472783 CGTATTGCTGCGCCATCTCACAGCTGGCCTCGACCGCCGCGTGGTAGATGGTCTCAAAGA 1472724 Query 244422 TCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGA 244481 || || ||| | | ||| |||| | || |||||| | | | | |||||| Sbjct 1472723 TCTGCTGGTTGAGCTTGCGTGCCTCGGGAGAGTCGAAGGGCAGACGAAGCGCCATGAACG 1472664 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 |||| ||||| || ||||| |||| ||||| || | ||| ||| ||||||||||| | | Sbjct 1472663 CGTCCGCCAGACCTTGCACACCGACACCGATAGGGCGGTGACGCATGTTGGAGCGCTTAG 1472604 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA--T 244599 | || || | ||||| |||| | ||||| | |||||||||| || || || | Sbjct 1472603 CCTCAGGGATTGGGTAGTGGTTGACATCGATGATGCGGTTGAGGTTGAAGGCGACCACCT 1472544 Query 244600 GCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGAT 244659 || | |||||| |||| ||| || | ||||| | |||| Sbjct 1472543 TCGTA--ACGTCGTGCAGCTTCTGGAAATTGTACTTG-------CCTC------------ 1472505 Query 244660 CCTC-ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGT 244718 |||| | ||| | || |||| ||||| |||||| || || ||| |||| Sbjct 1472504 CCTCGATGAACGAGGGAAGAGCGATAGAGGCCAAGTTGCAAACAGCGGTCTCGTCCGGCG 1472445 Query 244719 TGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGT 244778 || ||||| || || |||||||| || || | ||||||| ||||| || | ||| | Sbjct 1472444 AGGAGTACTCCACGATTTCGGTGCATAGATTCGAGGACTTGATAGTGCCGAGATTCTGCT 1472385 Query 244779 GATTGGACTTGGC 244791 | ||||||||||| Sbjct 1472384 GGTTGGACTTGGC 1472372 Score = 100 bits (110), Expect = 5e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 245015 AAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCA 245074 ||||||||||| | ||||||||| | ||| || || | | | ||| ||| ||| Sbjct 1472043 AAGAGGTCGGGTACCCAGAGGGCGTAGAAAAGATCACGAGCGCGGACCTCCTCCTTGCCG 1471984 Query 245075 GTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACA 245134 |||||| | || || | || || || || ||| ||||||||||||||| ||||| Sbjct 1471983 TGGTTCTTGCGGAGGTCGATGAATTCGAACACATCGGCGTGCCAGGGCTCCAAGTAGATG 1471924 Query 245135 GCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAG 245194 |||| || || ||||||||||| || ||||| || || | | ||||| | | Sbjct 1471923 GCGAACGCTCCAGGCCGCTTGTTACCACCCTGATCGACGTAACGGGCTGTCGCGTCGTAA 1471864 Query 245195 ATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGC 245252 | || || | || || || ||||| |||| ||||||||| || |||||||| || Sbjct 1471863 ACACGGAGCATGGGAACGATTCCGTTGGAGTAGCCGTTGGTCCCGGCGATGTAGGAGC 1471806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944335587902560