Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq29 152 1e-31 seq4 131 4e-25 seq111 91.5 3e-13 seq8 89.7 1e-12 seq74 84.2 5e-11 >seq29 Length=419596 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| ||||| |||| ||||| || || ||||| || ||||| | | Sbjct 161206 CCACCGCGGAGACGAAGGACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 161147 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || ||||| || | || || || |||||||| || ||||| || ||| Sbjct 161146 AGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 161087 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| ||||| || || || | || || || || Sbjct 161086 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCGACC 161027 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | |||||||||||| ||||| || ||||||||||| |||||||| Sbjct 161026 TCCAACGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 160980 >seq4 Length=1487122 Score = 131 bits (144), Expect = 4e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||||||||| ||||| || || || || || |||||| Sbjct 23361 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCGAAG 23420 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || || || ||| || || || || |||||||| ||||| |||||| Sbjct 23421 ATAAGACGTTGCTGG---TCCGGGGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCACG 23477 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || || ||||| || |||||||| || || |||||| Sbjct 23478 TTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCCCTGTGAGCGTCTTG 23537 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 23538 ACGAAGATCTGCAT 23551 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || |||||||| | ||| || || ||||| || ||||| | Sbjct 24062 CCGCCACGGAGGCGCAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAC 24121 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||| || || || | || || || |||||||| |||||||| || ||| Sbjct 24122 AACGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGG 24181 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| || || || || || | || ||| || || Sbjct 24182 ATGCCCTCCTTGTCCTGGATCTTCGCCTTAACATTGTCGATGGTGTCCGACGACTCAACC 24241 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| || || || ||||||||||| |||||||| Sbjct 24242 TCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 24288 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || | |||| |||| || || || || || ||||| | Sbjct 23553 CCACCGCGCAGACGAAGGACCAAGTGAAGCGTGGACTCCTTCTGAATGTTGTAGTCCGAC 23612 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||| || || || || || |||||||||| ||||| || | ||| Sbjct 23613 AGAGTACGTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGG 23672 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| ||||| || ||||| || || | ||| || || || Sbjct 23673 ATACCCTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACC 23732 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || ||||||||||| || ||||| Sbjct 23733 TCCAAGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAGATTTGCAT 23779 Score = 116 bits (128), Expect = 9e-21 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | | |||||| || || || | || || || |||||| Sbjct 23870 TCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAG 23929 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || |||||||| || ||||| |||||| || |||||||| || || || || ||| Sbjct 23930 ATAAGACGCTGCTGG---TCTGGCGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACG 23986 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || || || || || |||||||||||||| ||||||| ||||| Sbjct 23987 TTGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCCGGTCAACGTCTTC 24046 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 24047 ACGAAGATCTGCAT 24060 >seq111 Length=49823 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 325319 TATATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGA--ACCGAACTGGC 325376 || ||||| || || ||||| || |||||||| || || ||| |||||| || | Sbjct 11901 TAGATATAACGAGCCGCGGCGTGGTCTTTACCACCTTGG--TCACGAGTACCGAATTGAC 11958 Query 325377 CCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGA 325436 | | ||||| | ||| ||||| ||||||||||| || |||||||| ||||| | || Sbjct 11959 CGTTCGGCATGAGGAGGTTCATGTTGTTGCTTCCGACGTAGTCCTGTGCGAGGTTGATGA 12018 Query 325437 TGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGC 325496 |||| | || | ||| || || ||||| |||||| | ||| | ||| |||||| Sbjct 12019 TGGTGGCCATCAAACTTGCCTCACCGTGGTGGTAGGCGGAAATCTCGGAAACATAACCGA 12078 Query 325497 TGAACTGTGCAACCTTCACGTCG 325519 || || || |||| |||||| Sbjct 12079 CGAGTTGGGCGACCTAGACGTCG 12101 Score = 91.5 bits (100), Expect = 3e-13 Identities = 175/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 326078 TCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG 326137 || ||||||| ||| | |||| ||||| || ||| |||| ||||| | || | Sbjct 12933 TCCGTCATGAGCATGAGTCGACCATAACGCAGGGAGTTGATGTCCGTGTACTCCTTGTTG 12992 Query 326138 GTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGC 326196 || | ||| | ||| | |||| | ||| ||| || ||||||||| |||| || Sbjct 12993 TGCTGCAAGCCCATAATCTTCTTGATGTTCTG-GATCTCCTCGTTCTTCATGAT-CTGAT 13050 Query 326197 CACGGAT-GCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCT 326255 || | | || || ||||||||||| || |||||||| || ||||| || ||| | | | Sbjct 13051 CATGCTTCGCGTCACGGACGTTCAACAGCTTTCCACGCAGTGGGAAGACGCCAAAGTTGT 13110 Query 326256 CGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCA 326315 |||||||||| || || || || || || || | | |||||||| || || |||| Sbjct 13111 CGCGACCGACAACCCCGAGACCAGCAATCGCCAGCGCCCTGGCGGAATCACCTTCGGTCA 13170 Query 326316 GAATGAGAGTGCA 326328 ||||| ||||| Sbjct 13171 AGATGAGGGTGCA 13183 >seq8 Length=958091 Score = 89.7 bits (98), Expect = 1e-12 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 269138 TCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGG 269197 |||| ||| | | ||||| ||||| | | |||||| ||||| ||||| ||||| | Sbjct 469827 TCCCTTGTGCACTCATCGGCATGAACTCGAAGCTCATGTGCCAATACATCGAGTTCGTTG 469886 Query 269198 CTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCG 269257 | ||||| || || || ||||| ||||| ||||| | ||| ||||||| Sbjct 469887 CGGATCGCCTCCTCGTCGCTCTCGGCGGCGAGAAGCACTACAACGTCACGAACCCCTTCG 469946 Query 269258 CCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCG 269317 || ||||| | || |||||| | || ||||| ||||||||||| ||||||||| | Sbjct 469947 ATTTCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTCTCGG 470006 Query 269318 ACTA 269321 |||| Sbjct 470007 ACTA 470010 >seq74 Length=152073 Score = 84.2 bits (92), Expect = 5e-11 Identities = 91/120 (76%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 65523 TCGAGGGCGCGCTGAAGCTCAAAGAGATTTCGTATATTCATGCGGAAGGTTTTCATGGTG 65582 ||||||||||||| ||| |||| ||||| ||||| || || |||| || | | | | Sbjct 112781 TCGAGGGCGCGCTCAAGATCAAGGAGATCTCGTACATGCACTCGGAGGGCATCCTCGCGG 112840 Query 65583 GTGAGCTGAAGCATGGGCCTCTCGCTCTTATCGATGAGAAAACACCGG---TCATCGTGA 65639 | ||||| ||||| ||||| ||||| || ||||| ||||| | |||| ||||||||| Sbjct 112841 GCGAGCTCAAGCACGGGCCGCTCGCGCTGATCGACGAGAACATGCCGGTGATCATCGTGA 112900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179649775017468