Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq8 104 5e-17 seq111 91.5 3e-13 >seq8 Length=958091 Score = 104 bits (114), Expect = 5e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || || ||||||||||| | |||||| | || |||||||| ||||| || || ||| | Sbjct 469838 CTCATCGGCATGAACTCGAAGCTCATGTGCCAATACATCGAGTTCGTTGCGGATCGCCTC 469897 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || |||| || || ||||| |||||| || ||||||||| | || ||||| Sbjct 469898 CTCGTCGCTCTCGGCGGCGAGAAGCACTACAACGTCACGAACCCCTTCGATTTCATGGAC 469957 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTC 243726 | || ||||| || || || || ||||||||||| ||||||||| Sbjct 469958 ATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTC 470002 Score = 86.0 bits (94), Expect = 1e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||| | || ||| | ||||||||||| ||||| || |||||| | Sbjct 467077 GCTCATCGGCATGAACGCGCGGCTGATGTGCCAGTACATCGAGTTCGTCGCGGACCGCCT 467018 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || ||||||| || | ||||| ||| | | |||||| |||| ||| ||||| Sbjct 467017 GCTCGTCGCGCTCGGGAACGAGAAGCACTACCGCGCGGCGAACCCGTTTGACTTCATGGA 466958 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 | || ||||| || || || ||||||||||| ||||| || Sbjct 466957 CATGATCTCGCTCACCGGCAAGACGAACTTCTTCGAGAAGCGCGT 466913 >seq111 Length=49823 Score = 91.5 bits (100), Expect = 3e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGA--ACCGAACT 297494 ||| | ||||| || || ||||| || |||||||| || || ||| |||||| | Sbjct 11898 GTGTAGATATAACGAGCCGCGGCGTGGTCTTTACCACCTTGG--TCACGAGTACCGAATT 11955 Query 297495 GGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCA 297554 | || | ||||| | ||| ||||| ||||||||||| || |||||||| ||||| | Sbjct 11956 GACCGTTCGGCATGAGGAGGTTCATGTTGTTGCTTCCGACGTAGTCCTGTGCGAGGTTGA 12015 Query 297555 CGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAAC 297614 |||||| | || | ||| || || ||||| |||||| | ||| | ||| |||| Sbjct 12016 TGATGGTGGCCATCAAACTTGCCTCACCGTGGTGGTAGGCGGAAATCTCGGAAACATAAC 12075 Query 297615 CGCTGAACTGTGCAACCTTCACGTCG 297640 || || || || |||| |||||| Sbjct 12076 CGACGAGTTGGGCGACCTAGACGTCG 12101 Score = 86.0 bits (94), Expect = 1e-11 Identities = 174/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 298199 TCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG 298258 || ||||||| ||| | |||| ||||| || ||| |||| ||||| | || | Sbjct 12933 TCCGTCATGAGCATGAGTCGACCATAACGCAGGGAGTTGATGTCCGTGTACTCCTTGTTG 12992 Query 298259 GTTTGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTGC 298317 || | ||| | ||| | |||| | ||| ||| || ||||||||| |||| || Sbjct 12993 TGCTGCAAGCCCATAATCTTCTTGATGTTCTG-GATCTCCTCGTTCTTCATGAT-CTGAT 13050 Query 298318 CACGGAT-GCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCT 298376 || | | || || ||||| ||||| || |||||||| || ||||| || ||| | | | Sbjct 13051 CATGCTTCGCGTCACGGACGTTCAACAGCTTTCCACGCAGTGGGAAGACGCCAAAGTTGT 13110 Query 298377 CGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCA 298436 |||||||||| || || || || || || || | | |||||||| || || |||| Sbjct 13111 CGCGACCGACAACCCCGAGACCAGCAATCGCCAGCGCCCTGGCGGAATCACCTTCGGTCA 13170 Query 298437 GAATGAGAGTGCA 298449 ||||| ||||| Sbjct 13171 AGATGAGGGTGCA 13183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102875676021100