Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq29 95.1 1e-14 seq4 91.5 1e-13 >seq29 Length=419596 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | ||| || || || | ||||| || || || |||||||| || | Sbjct 160978 CCTCCGCGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 160919 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||| || |||| | |||||||||||||| ||| Sbjct 160918 AGAGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGCTGGTCGGGCGGA 160859 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || ||| || || | || || | || || Sbjct 160858 ATGCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 160799 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||||||||| || || || || || ||||| Sbjct 160798 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 160752 Score = 89.7 bits (98), Expect = 5e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || | || ||||||| |||| || |||||||| ||| Sbjct 160667 GTGGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGCCCGTCCTCGAGCTGCTTCCCG 160608 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAAT 64338 || | ||||| ||||||||||||||||| || Sbjct 160607 GCGAAGATGAGACGCTGCTGGTCGGGAGGGAT 160576 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || || |||| || || || || |||||||| || | Sbjct 161207 ACCACCGCGGAGACGAAGGACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGA 161148 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || |||| || |||||||||||||| | ||||| |||||||||||||| || Sbjct 161147 GAGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 161088 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| || | || || | || || Sbjct 161087 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCGAC 161028 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||||| | || || ||||| || ||||| Sbjct 161027 CTCCAACGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 160980 >seq4 Length=1487122 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||| || | |||| ||| || || || ||||||||||| || | Sbjct 23552 ACCACCGCGCAGACGAAGGACCAAGTGAAGCGTGGACTCCTTCTGAATGTTGTAGTCCGA 23611 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || |||| || | |||||||||||| | || | ||||||||||| ||||| Sbjct 23612 CAGAGTACGTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGG 23671 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || || ||| || || | || || | || || Sbjct 23672 GATACCCTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGAC 23731 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | || || ||||| |||||||| Sbjct 23732 CTCCAAGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAGATTTGCAT 23779 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64238 AGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGC 64297 || |||| || || || || || |||||||| || | | ||||| | || || ||| Sbjct 23855 AGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCAGC 23914 Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||||||||| | || || ||||||||||| || || ||||| || || || || || Sbjct 23915 TGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTGAATC 23974 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||| || || | || ||| | || || || | || | ||||||||| Sbjct 23975 TTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCCG 24034 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || ||||| || ||||| Sbjct 24035 GTCAACGTCTTCACGAAGATCTGCAT 24060 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | || || ||||| | || || || || || |||||||| |||| Sbjct 24061 ACCGCCACGGAGGCGCAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 24120 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | || || |||||||||||||| || Sbjct 24121 CAACGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGG 24180 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCC 64393 || || || || || || || || ||| ||| || | || | ||| || || Sbjct 24181 GATGCCCTCCTTGTCCTGGATCTTCGCCTTAACATTGTCGATGGTGT--CCGACGACTCA 24238 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || | |||||||| || | || || ||||| || ||||| Sbjct 24239 ACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 24288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642888858640