Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2 134 1e-26 >seq2 Length=1603695 Score = 134 bits (148), Expect = 1e-26 Identities = 174/239 (73%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 94069 TCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTC 94128 ||||||||| ||| ||||| ||| ||||||||| |||| || |||||||| || | Sbjct 1471808 TCCTACATCGCCGGGACCAACGGCTACTCCAACGGAATCGTTCCCATGCTCCGTGTTT-- 1471865 Query 94129 AACAACGCG---GCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCG 94185 || ||||| || || ||||| || ||||||||| | | || || | ||||| Sbjct 1471866 -ACGACGCGACAGCCCGTTACGTCGATCAGGGTGGTAACAAGCGGCCTGGAGCGTTCGCC 1471924 Query 94186 GTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCAC 94245 |||| | |||||||||||||| || ||| | ||||||||||| || ||||||||| Sbjct 1471925 ATCTACTTGGAGCCCTGGCACGCCGATGTGTTCGAATTCATCGACCTCCGCAAGAACCAC 1471984 Query 94246 GGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTT 94304 ||||| || || | || | || || |||||||| |||||||| || ||||| || Sbjct 1471985 GGCAAGGAGGAGGTCCGCGCTCGTGATCTTTTCTACGCCCTCTGGGTACCCGACCTCTT 1472043 Score = 100 bits (110), Expect = 3e-16 Identities = 236/350 (67%), Gaps = 21/350 (6%) Strand=Plus/Plus Query 94528 GCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATT 94587 |||||||||||||||||| | ||||| |||||| ||||||||| |||||||| || Sbjct 1472372 GCCAAGTCCAACCAGCAGAATCTCGGCACTATCAAGTCCTCGAATCTATGCACCGAAATC 1472431 Query 94588 GTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCC 94647 || ||||| | || |||||||||| ||||| || ||| ||| ||| ||| || || Sbjct 1472432 GTGGAGTACTCCTCGCCGGACGAGACCGCTGTTTGCAACTTGGCCTCTATCGCTCTTCCC 1472491 Query 94648 ACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAAC 94707 | ||| | |||| | || | ||| ||| | ||| | || || || Sbjct 1472492 TCGTTCAT-CGAG--GGAGGCAAG--TACAATTTC-CAGAAGCTGCACGACGTT----AC 1472541 Query 94708 TTCGCGGGAAGGATGGT---CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCC 94764 ||||| |||| ||| ||||| ||| | | ||||| ||| |||||| Sbjct 1472542 -------GAAGG-TGGTCGCCTTCAACCTCAACCGCATCATCGATGTCAACCACTACCCA 1472593 Query 94765 GTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGT 94824 |||| ||||| || ||| ||| || || || || ||||| |||| || || ||| Sbjct 1472594 ATCCCTGAGGCTAAGCGCTCCAACATGCGTCACCGCCCTATCGGTGTCGGTGTGCAAGGT 1472653 Query 94825 TTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGC 94874 | ||||||||| | || | | |||||||||| ||||||| ||| || Sbjct 1472654 CTGGCGGACGCGTTCATGGCGCTTCGTCTGCCCTTCGACTCTCCCGAGGC 1472703 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 95292 CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGAC 95351 ||||||||| || ||||||||| || || || ||| |||||||| |||||||||| Sbjct 1473168 CAACGGCTCGGTGCAGAACATCGACATCATCCCCGACGACGTCAAGGCGATCTACAAGAC 1473227 Query 95352 CGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCAT 95411 ||| ||||||||| ||||| | | || |||| ||| || | || || | ||||| Sbjct 1473228 CGTTTGGGAGATCTCGCAGAAGAAGGTCCTTGACCTCGCCGCGGATCGTGGAGCGTTCAT 1473287 Query 95412 CTGCCAG 95418 ||||||| Sbjct 1473288 CTGCCAG 1473294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721307683760