Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq8 159 3e-34 seq4 123 2e-23 seq29 116 4e-21 >seq8 Length=958091 Score = 159 bits (176), Expect = 3e-34 Identities = 293/428 (68%), Gaps = 11/428 (3%) Strand=Plus/Minus Query 47146 TCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACA 47205 |||| |||||| ||||||||||||||||||||| ||| || || || || || | Sbjct 467333 TCGCGTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCGGCTCGTTCGCCGCCATCTTCTGGC 467274 Query 47206 TGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACG 47265 | || | || | ||||||||||||||||| ||||||||| ||||| | |||| Sbjct 467273 TCAAGAAGCGCGGGCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCTCCCGCGACG 467214 Query 47266 AAGGCCTGCACACCAACTTTGCCTGTCTCTACTACAACACTAGAGTCGATCAAAAGTTGG 47325 | ||| |||| ||| |||| || || ||| || | ||| | || | || Sbjct 467213 AGGGCATGCATACCGACTTCGCGTGCCTCCTCTTC--CACCACCTCCGCC-----GGCGG 467161 Query 47326 ACGTGCCCAC----CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTT 47381 || ||| | ||| | ||| | ||||| ||||||| || |||| |||||| Sbjct 467160 CCGCACCCCCGCCGCGTGCTCCGCATCGTCGCCGAGGCCGTCGAGATCGAGAAGGAGTTC 467101 Query 47382 TTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTAC 47441 || | ||||| || || | || | | || ||||||||| | ||||| | ||||| Sbjct 467100 CTCACGGAGGCGCTCCCGGTCTCGCTCATCGGCATGAACGCGCGGCTGATGTGCCAGTAC 467041 Query 47442 ATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACC 47501 ||||| || ||||| |||||||||||||| ||| | | ||| |||| | | Sbjct 467040 ATCGAGTTCGTCGCGGACCGCCTGCTCGTCGCGCTCGGGAACGAGAAGCACTACCGCGCG 466981 Query 47502 GAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAG 47561 | ||| || || || || ||| ||| || |||||| |||||||| ||||| |||||| Sbjct 466980 GCGAACCCGTTTGACTTCATGGACATGATCTCGCTCACCGGCAAGACGAACTTCTTCGAG 466921 Query 47562 AAGCGCGT 47569 |||||||| Sbjct 466920 AAGCGCGT 466913 >seq4 Length=1487122 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | || ||||| || || || ||||| || || ||||||| | Sbjct 24074 CGCAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGACAACGTGCGACCA 24133 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| ||||| || |||||||||||| Sbjct 24134 TCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 24193 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||| | | |||| |||||||| ||| || |||| ||| | | Sbjct 24194 TCCTGGATCTTCGCCTTAACATTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATC 24253 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || || || || || ||||||||| Sbjct 24254 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 24289 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || ||||| ||||| || | Sbjct 23553 CCACCGCGCAGACGAAGGACCAAGTGAAGCGTGGACTCCTTCTGAATGTTGTAGTCCGAC 23612 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||| || || ||| ||||||| |||||||| || ||||| Sbjct 23613 AGAGTACGTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGG 23672 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| ||| ||||| |||| |||| ||||| | | |||||| Sbjct 23673 ATACCCTCCTTGTCTTGGATCTTCGCCTTGACGTTG-TCGATCGTGTCGGAAGACTCGAC 23731 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || || || || || || || ||||| Sbjct 23732 CTCCAAGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAGATTTGCAT 23779 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| ||| | |||||| || || | ||| || || Sbjct 23354 CGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCC 23413 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 |||| |||| | || ||||| || || || || |||||||||||| ||| ||| ||| Sbjct 23414 AGCGAAGATAAGACGTTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTCGCCTT 23473 Query 127036 GA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | |||| |||| ||||||| ||| || || | || | || || || || || | Sbjct 23474 CACGTTG-TCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCCCTGTGAGCG 23532 Query 127095 TTTTTACAAAAATCTGCAT 127113 | || || || |||||||| Sbjct 23533 TCTTGACGAAGATCTGCAT 23551 >seq29 Length=419596 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | ||||| ||| || ||||| || || Sbjct 160948 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCT 160889 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| |||||||| ||||| || |||||||||||||| || ||| |||| Sbjct 160888 GCGAAAATCAAGCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTG 160829 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| |||||| | |||||| |||| ||| | || |||||||||| || Sbjct 160828 ACGTTG-TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAGGT 160770 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 160769 CTTGACAAAGATCTGCAT 160752 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | |||||||| ||||| || || ||||||||| Sbjct 161134 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTG 161075 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||| | | |||| ||||||| | |||||| || | || | | Sbjct 161074 TCCTGGATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCGACCTCCAACGTGATC 161015 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || |||||||| || || || || || ||||||||| || Sbjct 161014 GTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATGCCT 160976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498981209440