Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq29 107 2e-18 seq4 84.2 2e-11 >seq29 Length=419596 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | | || || || || || || ||||| ||||| || || || Sbjct 160981 ATGCCTCCGCGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCC 160922 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || |||||| | ||||| || |||||||| ||| Sbjct 160921 GAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGCTGGTCGGGC 160862 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || |||||||| || |||| || | || | ||||||||| ||||| Sbjct 160861 GGAATGCCCTCCTTGTCTTGAATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGACGACTC 160803 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || |||||||| | || || ||||| || ||||| Sbjct 160802 GACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 160752 >seq4 Length=1487122 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| || || || ||| | || | || |||||||| ||||| || || || || Sbjct 23905 ATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTT 23964 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||| ||||| || |||| || | || | |||||| ||||||||||| || || || | Sbjct 23965 ATCCTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGA 24023 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||| |||||||| | || || || || || ||||| ||| || Sbjct 24024 TCGTCTTGCCGGTCAACGTCTTCACGAAGATCTGCATACCGCCAC 24068 Score = 82.4 bits (90), Expect = 7e-11 Identities = 118/164 (72%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| || || || ||| | ||||| || |||||||| || || || || || || Sbjct 23625 TCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTG 23684 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || |||| || | || | ||||||||||||||||| || | || | Sbjct 23685 TCTTGGATCTTCGCCTTGA-CGTTGTCGATCGTGTCGGAAGACTCGACCTCCAAGGTGAT 23743 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || ||||| || || || || || || |||||||| ||| || Sbjct 23744 GGTCTTGCCCGTGAGCGTCTTGACGAAGATTTGCATACCGCCAC 23787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001471087760