Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq8 122 1e-22 >seq8 Length=958091 Score = 122 bits (134), Expect = 1e-22 Identities = 333/504 (66%), Gaps = 11/504 (2%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 ||||| || ||||||||||| || || ||||| || || ||||| | || |||||| Sbjct 469652 CCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCAGGCATCAAGCCACGCTTC 469593 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || || |||||||||||||| ||||||||| ||||| Sbjct 469592 TTGAGCCAGAAGATGGAGGCGAAGGATCCAGAGAAGAAGATACCCTCCACAGCGGCGAAG 469533 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGTATCAAA-CCACTTCATCGCCCAC 127714 || | ||||||||||| || | |||| |||| ||| ||| | ||||| Sbjct 469532 GCGATGAGACGCTCGGCGAACG---CAGACTCCTTGTCGGAAATCCAGCGAAGAGCCCAG 469476 Query 127715 TGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT 127774 | ||||| |||| ||| || || | ||| | ||| || || ||||| | || | Sbjct 469475 TCGGCCTTCTTCTTGATGCAAGGAATGGTGTCGATGGCGTCGAAGAGGTGCTCGCGCTGA 469416 Query 127775 GATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCAT-TTC 127833 | || || |||||||| |||| ||||| || || || || ||||| | | | Sbjct 469415 GCGGGGTCCTTGATGTAGGTATCAATGAGGAGCGAGTAGGTCTCCGAGTGGATGTTCTCC 469356 Query 127834 ATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAAA 127893 || || ||| | ||||||| |||||||||| | ||| ||||| | || ||| Sbjct 469355 ATCAT-AATCTGGAAGCCGTAGAAGCAGCGCGCTTCCGCTGCCTGAACCTCGTTGGAAAA 469297 Query 127894 ATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATA 127953 | | || ||||| || || || || ||| | || || || || |||| | Sbjct 469296 CCTCTCGACGAGGTTCTCGTTGACGATGCCGTCCGACGCGGCGAAGAATGCGAGGACGTG 469237 Query 127954 CTTTATGAATTTCTGTTCATTCTCGTTCAG---GGTCTTCCAGTCGTCGAGATCCTTTGA 128010 | ||||| | | |||| ||| | || | | |||||||||| |||||||| || Sbjct 469236 CGAAATGAAGTATCGCTCATCGTCGGTGAGCTTGTTGTTCCAGTCGTGCAGATCCTTGGA 469177 Query 128011 GAGATCTACCTCCTCCGCAGTCCA 128034 | || | |||||| || ||||| Sbjct 469176 CAAGTCCATCTCCTCTGCCGTCCA 469153 Score = 105 bits (116), Expect = 8e-18 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||| ||||||||||| || || ||||| || || |||||||| || |||||| Sbjct 467210 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAGCCCGCGCTTC 467269 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || || || ||||| |||||||||| ||||| || |||||| Sbjct 467270 TTGAGCCAGAAGATGGCGGCGAACGAGCCGGAGAAGAAGACGCCCTCGACGGCGGCGAAC 467329 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGT-ATCAAACCACTTCATCGCCCACT 127715 || | || ||||| ||||| ||| | || | || | | |||| | ||||| | Sbjct 467330 GCGACGAGCCGCTCCGCAAA--AGCAGAACGCTCGTCCGCGATCCACCGGAGGGCCCAGT 467387 Query 127716 GTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 ||||| |||| ||| || || | ||| | ||| || || ||||| Sbjct 467388 CGGCCTTCTTCTTGATGCAGGGTATGGTGTCGATGGCGTCGAAGAG 467433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504853334960