Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq29 156 5e-33 seq4 152 6e-32 seq9 87.8 2e-12 seq13 82.4 9e-11 >seq29 Length=419596 Score = 156 bits (172), Expect = 5e-33 Identities = 152/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| | || |||||||||||||| ||||| Sbjct 160943 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAA 160884 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||||| ||| | || ||||||||| |||||| ||||| ||| Sbjct 160883 AATCAAGCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTGA-CGT 160825 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || || | |||||||| ||||| |||| || || | Sbjct 160824 TGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 160765 Query 46581 CAAAGATTTGCAT 46593 ||||||| ||||| Sbjct 160764 CAAAGATCTGCAT 160752 Score = 149 bits (164), Expect = 7e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 || |||||||| ||||| |||||||| || || || || |||| ||||||||||||||| Sbjct 161176 GTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGGCCGTCCTCGAGCTGCTTGCCG 161117 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | |||||||||||||| ||| | | |||||||||| ||||||| ||| Sbjct 161116 GCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTC 161057 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| || || || |||| |||||| || ||||| || ||||| Sbjct 161056 ACATTATCGATCGTGTCCGAAGACTCGACCTCCAACGTGATCGTCTTGCCGGTGAGCGTC 160997 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||| ||||| Sbjct 160996 TTGACGAAGATCTGCAT 160980 Score = 89.7 bits (98), Expect = 6e-13 Identities = 80/99 (81%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 46384 CACC-AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGT 46442 |||| || ||||| || |||||| || || |||||||| || || |||||| |||| | Sbjct 160681 CACCGAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGCCCGTCCT 160622 Query 46443 CGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 |||||||||| |||||||| || | ||||||||||||| Sbjct 160621 CGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTCGG 160583 >seq4 Length=1487122 Score = 152 bits (168), Expect = 6e-32 Identities = 151/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || ||||| || |||| || | ||||||||||||||| Sbjct 23588 CTCCTTCTGAATGTTGTAGTCCGACAGAGTACGTCCGTCCTCCAACTGCTTGCCGGCGAA 23647 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||||||||||||||| | || | | ||||||||| ||||||| ||||| ||| Sbjct 23648 GATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTCGCCTTGA-CGT 23706 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| || || || |||| |||||||| |||||||| ||||| || | Sbjct 23707 TGTCGATCGTGTCGGAAGACTCGACCTCCAAGGTGATGGTCTTGCCCGTGAGCGTCTTGA 23766 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 23767 CGAAGATTTGCAT 23779 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||| | || |||||| ||||| |||||||| || | ||||| | Sbjct 24074 CGCAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGACAACGTGCGACCA 24133 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||||||||| || | ||||||||||||| ||| | || ||||||| Sbjct 24134 TCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTG 24193 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||||| ||| | | | | ||||| ||| || || || | ||||| Sbjct 24194 TCCTGGATCTTCGCCTTAACATTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATC 24253 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || || || ||||| ||||| Sbjct 24254 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 24288 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| || | |||||| || ||||| Sbjct 23360 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCGAA 23419 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | || | | |||||||||| ||||||| ||| | ||| Sbjct 23420 GATAAGACGTTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 23478 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || |||| ||| ||||| || || || ||||| || | Sbjct 23479 TGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCCCTGTGAGCGTCTTGA 23538 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 23539 CGAAGATCTGCAT 23551 Score = 116 bits (128), Expect = 4e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || | ||||| | || || ||||||||||||||||| Sbjct 23869 CTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 23928 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | ||| | | |||||| ||| ||||| ||||| ||| Sbjct 23929 GATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGA-CGT 23987 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || |||| |||||| || ||||| |||| ||| || | Sbjct 23988 TGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCCGGTCAACGTCTTCA 24047 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 24048 CGAAGATCTGCAT 24060 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||| ||||| Sbjct 24325 CTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 24384 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 |||| |||||||||||||| Sbjct 24385 GATCAGGCGCTGCTGGTCGG 24404 >seq9 Length=891578 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||| ||||| ||||||||| || ||||| | || || Sbjct 319908 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTC 319849 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 |||||||||||| ||||| |||| |||||||||||||| Sbjct 319848 GAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGG 319811 >seq13 Length=709687 Score = 82.4 bits (90), Expect = 9e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| || || || |||| |||||||||||||| ||||| Sbjct 148008 CTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCCTCGAGCTGCTTGCCAGCGAA 148067 Query 46462 TATCAAGCGCTGCTGGTCGG 46481 |||| ||||||||||||| Sbjct 148068 GATCAGACGCTGCTGGTCGG 148087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565236237963120