Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5 214 2e-50 seq15 136 5e-27 seq17 131 2e-25 seq26 84.2 3e-11 >seq5 Length=1334057 Score = 214 bits (236), Expect = 2e-50 Identities = 259/353 (73%), Gaps = 0/353 (0%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || ||||| || ||||| || |||||||| Sbjct 395300 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTGGCCTTGACCTCGAAGATACCC 395241 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | ||| ||||| || || || ||||| || || || ||||| ||| Sbjct 395240 TCCTCGATGGTCAGGAGCGACACATCGAAGGTTCCTCCACCGAGATCGAAGATGAGGACG 395181 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | | | ||||| ||||||||||||||||| || ||||| || || || Sbjct 395180 TTGCGCTCGCCAACGGTCTTCTTGTCGAGACCGTACGCGATGGCGGCCGCAGTGGGCTCG 395121 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || | || || |||| || || ||||| || ||| Sbjct 395120 TTGATGATACGGAGGACGTTGAGACCCGAGATGGTACCCGCGTCCTTAGTCGCCTGACGT 395061 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 ||||| ||||| |||||||| ||||| || ||||| ||| ||||| | |||||| Sbjct 395060 TGCGAGTCGTTGAAGTAGGCGGGGACGGTGACGACAGCGGAGGTGACGGTGCCACCGAGG 395001 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || || ||||| || ||||| || || || ||||| || |||||||| || Sbjct 395000 TATGACTCGGCGATCTCCTTCATCTTCGTGAGGACCATGGAGGAAATCTCCTC 394948 Score = 134 bits (148), Expect = 2e-26 Identities = 161/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 7898 TTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 || || ||| ||| |||| |||||| ||||| | ||||| |||||||| || || Sbjct 394805 TTGATGTCGGATTGCACCTCGGGGTCCGCGAACTTGCGGCCGATGAGACGCTTGGCGTCG 394746 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || || ||||| | ||||||||| || ||||||||||| || || ||||| | || Sbjct 394745 AAGACGGTGTTGTGGGGGTTCATCGCGACCTGGTTCTTCGCGGCATCGCCGATCAACCGC 394686 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | | | || || |||||||| || |||||||| || || || |||||||| || Sbjct 394685 TCGGTGT---CGGTGAAGGCGACGTATGAGGGGGTCGTGCGGTTACCCTGGTCGTTGGCG 394629 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || || || || ||||||||||| |||||||| Sbjct 394628 ATGATCTCAACACGATCATTTTGCCAGACACCGACGCA 394591 >seq15 Length=655517 Score = 136 bits (150), Expect = 5e-27 Identities = 199/277 (72%), Gaps = 7/277 (3%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||| ||| || || || || ||||| ||||| |||||| ||| Sbjct 32988 TCGAAGTCCTCACCACCCAGGTGGGTGTCGCCGGCAGTCGCCTTGACGGCAAAGACACCG 33047 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||||| | | || ||||| || || || ||||| || || |||||||| ||| Sbjct 33048 CCGGTGATGTTGAGGAGAGAGACATCGAAGGTTCCTCCACCAAGATCGAAAATGAGGACG 33107 Query 7577 TTCGTATCGTCGTCTTTGTTCTTA---TCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 ||| | || ||| | | | | | ||||||||||||||||| || || || || || Sbjct 33108 TTCTTCTC--CGTGCTCGAT-TGACGGTCGAGACCGTACGCGATGGCAGCAGCGGTGGGC 33164 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| || | |||||||| || | | ||||| || ||||| | Sbjct 33165 TCGTTGATGATACGGAGGACCTCGAGGCCAGCGATGGAACCAGCATCCTTGGTCGCAAGA 33224 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGA 7730 ||||| || ||||| ||||| || |||| || ||||| Sbjct 33225 CGTTGGGAGTCGTTGAAGTACGCGGGGA-CGCTACGA 33260 >seq17 Length=648188 Score = 131 bits (144), Expect = 2e-25 Identities = 241/353 (68%), Gaps = 3/353 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || ||||| | || || || || ||||| || ||| || |||| || Sbjct 433073 TCGAAGTCCTCGCCACCAAGATGGGTGTCGCCGGCGGTTGCCAGGACCTCGAAGACGCCG 433014 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || ||||| || || ||||| || || || | | || | Sbjct 433013 TCGTCGATGGAGAGGAGGGAGACATCGAAGGTTCCACCGCCGAGATCGTAGACGATGATC 432954 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || ||| || | || ||| ||||||||||| ||||| || ||||| || || || Sbjct 432953 TGCGACTCGCCGCCCTT---CTTGTCGAGACCGTAGGCGATGGCGGCCGCAGTGGGCTCG 432897 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || |||||||| | || || || ||||| | || || || ||||| || || Sbjct 432896 TTGATGATACGAAGGACCTGGAGACCGGCGATAGTGCCGGCGTCCTTTGTCGCCTGACGC 432837 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 |||| ||||| |||||||| ||||| || ||||| |||| ||||| | | | || || Sbjct 432836 TGCGCGTCGTTGAAGTAGGCGGGGACGGTGACGACAGCGTGGGTGACCTGCCTGCCAAGG 432777 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 |||| || ||| | || ||||| ||| || ||||| | || ||||| || Sbjct 432776 TACGCCTCGGCGGTCTCCTTCATCTTGCCCAGGACCATGGCGGAGATCTCCTC 432724 >seq26 Length=451100 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 |||||||||||||| | ||||| || || || || || || | ||| ||| | || Sbjct 170660 TCGAGACCGTACGCCAACGCCGCAGCTGTGGGCTCGTTGATGACACGGAGAACATCGAGA 170601 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 || || ||||| | ||||| ||||| ||||| ||||||| ||||| ||||| || || Sbjct 170600 CCGGCGATAGTGCCAGCATCCTTCGTTGCTTGCCGTTGCGCGTCGTTGAAGTACGCAGGA 170541 Query 7721 ACCGTTACGACCGC 7734 || || ||||| || Sbjct 170540 ACAGTGACGACAGC 170527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130370617040