Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8 141 1e-28 seq4 104 3e-17 seq1 87.8 2e-12 seq59 86.0 7e-12 seq10 86.0 7e-12 seq32 82.4 9e-11 seq7 82.4 9e-11 >seq8 Length=958091 Score = 141 bits (156), Expect = 1e-28 Identities = 350/527 (66%), Gaps = 12/527 (2%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || ||||| || ||||||||||| || ||| || |||||||| | || | ||| Sbjct 469652 CCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCAGGCATCAAGCCACGCTTC 469593 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||||| || |||||| |||||||| ||||||||| |||||| Sbjct 469592 TTGAGCCAGAAGATGGAGGCGAAGGATCCAGAGAAGAAGATACCCTCCACAGCGGCGAAG 469533 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGA---CTTGTCG---AACCACTTGAGAGCCCAG 119687 |||| |||||||| || || | ||| ||||||| | ||| ||||||||| Sbjct 469532 GCGATGAGACGCTCGGCGAACG---CAGACTCCTTGTCGGAAATCCAGCGAAGAGCCCAG 469476 Query 119688 TTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTTCA 119747 | |||||| || ||||| || | || | |||||| ||||| || |||| | | Sbjct 469475 TCGGCCTTCTTCTTGATGCAAGGAATGGTGTCGATGGCGTCGAAGAGGTGCTCGCGCTGA 469416 Query 119748 GCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTTCA 119807 || ||||| || || |||||||||| ||||||||||| || | | || Sbjct 469415 GCGGGGTCCTTGATGTAGGTATCAATGAGGAGCGAGTAGGTCTCCGAGTGGATGTTCTCC 469356 Query 119808 TTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAA 119867 | ||| || | || || |||| ||||| | || || |||| | ||| Sbjct 469355 ATCATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCCGCTGCCTGAACCTCGTTGGAAAAC 469296 Query 119868 TTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTAC 119927 | | | || || || || || || || || | ||||||||||| | || || | Sbjct 469295 CTCTCGACGAGGTTCTCGTTGACGATGCCGTCCGACGCGGCGAAGAATGCGAGGACGTGC 469236 Query 119928 TTTATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTCCAGTCGTCCATATCTTTAGAC 119984 ||||| | | |||| ||| |||| |||| |||||||||| || ||| || ||| Sbjct 469235 GAAATGAAGTATCGCTCATCGTCGGTGAGCTTGTTGTTCCAGTCGTGCAGATCCTTGGAC 469176 Query 119985 AAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATA 120031 ||||||| ||| || || |||||| ||| || ||||| || || Sbjct 469175 AAGTCCATCTCCTCTGCCGTCCAGAAGGACGCCTCAGCCTTCTTGTA 469129 Score = 100 bits (110), Expect = 3e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 || || || || ||||||||||| || ||| || || |||||||| || | ||| Sbjct 467210 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAGCCCGCGCTTC 467269 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| |||||||| || || || ||||||| |||||| || |||||| Sbjct 467270 TTGAGCCAGAAGATGGCGGCGAACGAGCCGGAGAAGAAGACGCCCTCGACGGCGGCGAAC 467329 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGACTTGT---CGAACCACTTGAGAGCCCAGTTG 119690 |||| || ||||| ||||||| | || || ||| |||| ||| ||||||| | Sbjct 467330 GCGACGAGCCGCTCCGCAAAAGCAGAACGCTCGTCCGCGATCCACCGGAGGGCCCAGTCG 467389 Query 119691 GCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 ||||| || |||||||| | || | |||||| ||||| || Sbjct 467390 GCCTTCTTCTTGATGCAGGGTATGGTGTCGATGGCGTCGAAGAG 467433 >seq4 Length=1487122 Score = 104 bits (114), Expect = 3e-17 Identities = 220/325 (68%), Gaps = 9/325 (3%) Strand=Plus/Plus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTG- 11646 || |||| |||||||| || ||| |||||||| | |||||| || ||||| ||||| Sbjct 943749 TGCCGAAGCCGTCCATCTCGACGAGGAGCTGGTTCAGCGTCTGCTCGCGCTCGTCGTTCC 943808 Query 11647 ----GAGGGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAA 11702 || | | | | | | ||| ||| ||| |||| ||||| || || |||||||| Sbjct 943809 CGCCGAAGCCCTTGCCCTTCCCG--CGCGACTTGCCGATGGCGTCGATTTCGTCGATGAA 943866 Query 11703 TACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCC 11762 ||||| |||| ||| ||| |||| || ||||| ||||| | || Sbjct 943867 GACGATCGACGGCGCGTTCTTCTTCGCCGTCGCGAAGAGGTCACGCACACGGGAGGAACC 943926 Query 11763 AACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAAT-GAAGGGAACATTAG 11821 |||||| ||||| | ||| ||||| | | | | || ||| || | ||| || || | Sbjct 943927 AACACCGACGAAGAGCTCGACGAACTCGGAGCCGGA-CACGGAGTAGAACGGCACGCCCG 943985 Query 11822 ACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAA 11881 ||| || ||| | || ||||| || |||||||||||||| || | ||| | ||| | Sbjct 943986 CCTCGCCCGCGGTCGCCTTCGCGAGCAGGGTCTTACCCGTACCCGGGGGACCTGAGAGGA 944045 Query 11882 GGGCGCCACGGGGGATCTTGGCACC 11906 || || ||||||||||| || || Sbjct 944046 TAGCACCGCGGGGGATCTTCGCGCC 944070 >seq1 Length=1776945 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 727154 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGATCCCGGCG 727213 Query 136775 TTGGGAACAGCTTTT 136789 |||| | ||||||| Sbjct 727214 TTGGCCAAAGCTTTT 727228 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 740790 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGATCCCGGCG 740731 Query 136775 TTGG 136778 |||| Sbjct 740730 TTGG 740727 >seq59 Length=184886 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/75 (87%), Gaps = 4/75 (5%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 101216 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGATCCCGGCG 101157 Query 136775 TTGGGAACAGCTTTT 136789 |||| |||||||| Sbjct 101156 TTGG--CCAGCTTTT 101144 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 94543 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGATCCCGGCG 94602 Query 136775 TTGG 136778 |||| Sbjct 94603 TTGG 94606 >seq10 Length=765540 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/75 (87%), Gaps = 4/75 (5%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 340263 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGATCCCGGCG 340204 Query 136775 TTGGGAACAGCTTTT 136789 |||| |||||||| Sbjct 340203 TTGG--CCAGCTTTT 340191 >seq32 Length=364690 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 64927 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGATCCCGGCG 64986 Query 136775 TTGG 136778 |||| Sbjct 64987 TTGG 64990 >seq7 Length=1017230 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/64 (89%), Gaps = 2/64 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| ||||||| ||| || Sbjct 84386 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGTCGGTTCGATCCCGGCG 84445 Query 136775 TTGG 136778 |||| Sbjct 84446 TTGG 84449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973747166800