Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq8 95.1 1e-14 >seq8 Length=958091 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 |||||||| ||||| || || || || ||||| ||||| ||||| | || |||||| Sbjct 469652 CCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCAGGCATCAAGCCACGCTTC 469593 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | | ||| || || ||||||||||||||||||||| || || Sbjct 469592 TTGAGCCAGAAGATGGAGGCGAAGGATCCAGAGAAGAAGATACCCTCCACAGCGGCGAAG 469533 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACT--TTGT-GTCAAACCATTTCATTGCCCAT 117468 || | || ||||||||||| | ||||| |||| | || ||| | ||||| Sbjct 469532 GCGATGAGACGCTCGGCGAACG---CAGACTCCTTGTCGGAAATCCAGCGAAGAGCCCAG 469476 Query 117469 TTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCT 117520 | |||||||||| || || || | || | |||||| || || | |||| Sbjct 469475 TCGGCCTTCTTCTTGATGCAAGGAATGGTGTCGATGGCGTCGAAGAGGTGCT 469424 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| || ||||| || || || || ||||| ||||| |||||||| || |||||| Sbjct 467210 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAGCCCGCGCTTC 467269 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || ||| ||| || ||||||||||||| ||||| || || ||| Sbjct 467270 TTGAGCCAGAAGATGGCGGCGAACGAGCCGGAGAAGAAGACGCCCTCGACGGCGGCGAAC 467329 Query 117412 GCAAAAAGGCGCTCGGCGAA 117431 || | || ||||| || || Sbjct 467330 GCGACGAGCCGCTCCGCAAA 467349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978543323440