Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq29 145 2e-29 seq4 136 9e-27 >seq29 Length=419596 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || ||||| || || || ||||| || | |||||| | ||||| || Sbjct 160961 AACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTC 160902 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| |||||||| || | || || ||||| || |||||||| || |||||||| Sbjct 160901 GAGCTGCTTGCCTGCGAAAATCAAGCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCTTG 160842 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||||||||| || |||||||| || || || || ||||| | ||||| Sbjct 160841 AATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTT 160782 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || || || | ||||| Sbjct 160781 GCCGGTCAAGGTCTTGACAAAGATCTGCAT 160752 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| ||| ||| || || || ||||| || | || || | || || ||| Sbjct 161188 ACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGGCCGTCCTCG 161129 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| || || || || || ||||| || Sbjct 161128 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGG 161069 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || || || ||||||||| || || || | || | |||||| Sbjct 161068 ATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCGACCTCCAACGTGATCGTCTTG 161009 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 161008 CCGGTGAGCGTCTTGACGAAGATCTGCAT 160980 >seq4 Length=1487122 Score = 136 bits (150), Expect = 9e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||||||||| || ||||| || || || ||||| || | | || | ||||| || | Sbjct 23853 CAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCA 23912 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 ||||||| || ||||||||||| || || |||||||| || || || || || || |||| Sbjct 23913 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTGAA 23972 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || ||||||||| || |||||||| ||| || || || || || | |||||| | Sbjct 23973 TCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGC 24032 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || ||||| | ||||| Sbjct 24033 CGGTCAACGTCTTCACGAAGATCTGCAT 24060 Score = 127 bits (140), Expect = 5e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 194933 CAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGA 194992 |||||||||| || ||||| || || || ||||| |||| || || | || || || | Sbjct 23344 CAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCA 23403 Query 194993 GCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAA 195052 |||||| || ||||||||||| ||||| ||||| || ||||| || || ||||| || | Sbjct 23404 ACTGCTTCCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGA 23463 Query 195053 TTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTC 195112 | || ||| ||||| || || |||||||| || || || || |||| ||||| | Sbjct 23464 TCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCC 23523 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| | || || ||||| | ||||| Sbjct 23524 CTGTGAGCGTCTTGACGAAGATCTGCAT 23551 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | || ||| || || || |||||||| || || || ||||| || | | || | Sbjct 24070 GAGGCGCAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGACAACGTGCG 24129 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||| ||||||||||| || ||||||||||| || || ||||| || || ||||| || Sbjct 24130 ACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTC 24189 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || || || ||| || || || ||||||||||| || || || ||||| Sbjct 24190 CTTGTCCTGGATCTTCGCCTTAACATTGTCGATGGTGTCCGACGACTCAACCTCGAGGGT 24249 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | || || ||||| | ||||| Sbjct 24250 GATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 24288 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| |||||||| || || || ||||| || | || || | || || ||| Sbjct 24308 ACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCCTCG 24367 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||||||| || |||||||| || || || ||||| ||||| |||| Sbjct 24368 AGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATGC 24413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109477250138702