Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4 113 3e-20 seq29 104 2e-17 >seq4 Length=1487122 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||||||||| |||||||| || | ||| | || ||| Sbjct 23571 ACCAAGTGAAGCGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGTCCGTCCTCC 23630 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || ||||| || || | || |||||||| | || | ||||||||||| Sbjct 23631 AACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGG 23690 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | |||| || | ||| || || | ||| ||||| || Sbjct 23691 ATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCCAAGGTGATGGTCTTG 23750 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||||| ||||| || ||||| |||||| Sbjct 23751 CCCGTGAGCGTCTTGACGAAGATTTGCATA 23780 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || | || |||| ||| || || || || Sbjct 23361 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCGAAG 23420 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| | || | |||||||||||| |||||| || ||| Sbjct 23421 ATAAGACGTTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTG 23480 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || |||||| || | || ||||| || || ||||| ||||| || Sbjct 23481 TCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCCCTGTGAGCGTCTTGACG 23540 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 23541 AAGATCTGCATA 23552 Score = 98.7 bits (108), Expect = 6e-16 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | | || |||| || ||||| || ||||| || Sbjct 24098 TCCTTCTGGATGTTGTAGTCTGACAACGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAG 24157 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| |||||| || || || Sbjct 24158 ATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTAAC--AT 24215 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | |||||| |||| ||| || || || |||||||| ||||| Sbjct 24216 --TGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTT 24273 Query 34967 CACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 24274 GACGAAGATCTGCAT 24288 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| |||||||| | | || |||| |||||||| || ||||| || Sbjct 23870 TCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAG 23929 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| |||| | |||||||| || |||||| |||||| Sbjct 23930 ATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTG 23989 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | || || || || || || | |||||||| Sbjct 23990 TCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCCGGTCAACGTCTTCACG 24049 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 24050 AAGATCTGCATA 24061 >seq29 Length=419596 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||||||| | || |||| || ||||| || || || || Sbjct 160942 TCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAAA 160883 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||||| |||| | ||||||||||| ||||||| |||||| Sbjct 160882 ATCAAGCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTG 160823 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| ||||| || || || | ||||| ||| Sbjct 160822 TCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACA 160763 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 160762 AAGATCTGCATA 160751 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||||| || ||||| ||||| |||||||| || | || | || || ||||| Sbjct 161183 GTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGGCCGTCCTCGAGCTG 161124 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || ||||| || || || || |||||||| |||| | ||||||||||| ||||| Sbjct 161123 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTT 161064 Query 34898 CTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTC 34953 | || || || ||||||| | ||| | ||| || || | || || || || | Sbjct 161063 CGCCTTCAC--AT--TATCGATCGTGTCCGAAGACTCGACCTCCAACGTGATCGTCTTGC 161008 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| ||||| || ||||||||||| Sbjct 161007 CGGTGAGCGTCTTGACGAAGATCTGCAT 160980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632389319568