Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6 140 3e-28 >seq6 Length=1235503 Score = 140 bits (154), Expect = 3e-28 Identities = 174/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 30112 TGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCC-CTCATGTCCGTGTACTCTGCTCC 30170 || ||||| || || ||| | || | ||||| || | || |||| ||| | || || Sbjct 27850 TGGAGCTGGTCGACGCCCTTGCCGGTATAGTCGGCGTCGCA-GTCCTCGTATTGCGCGCC 27792 Query 30171 GAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAA 30230 ||| |||| ||||||||| ||||| || || || ||||| || || |||||| | | Sbjct 27791 GAAGTGCCGCCACTGGAAGCCGTAAACGGGGCCGAGGTCGCCTTCGCGTCTGTGCCCTAG 27732 Query 30231 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30290 ||| | ||| || | ||||| |||| || ||| ||||||||||||| | ||||| | Sbjct 27731 GCCGCGCTTCTCGAGGAAGTCCTTGGAGCCATTGCCGTCCCAGATCTTGATGCCCTTTGC 27672 Query 30291 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGA 30346 |||||||| ||||||| |||| | ||| ||||||||| || |||||||| |||| Sbjct 27671 GGAGAGCTTCTTGGAGTCTGTGCAGCCTTGGACGAACCAGAGGAGCTCCTCGACGA 27616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616076111738