Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq8 273 4e-68 >seq8 Length=958091 Score = 273 bits (302), Expect = 4e-68 Identities = 397/559 (71%), Gaps = 9/559 (2%) Strand=Plus/Minus Query 48123 AGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGA 48182 |||||| || || ||||| |||||| ||| || || ||| ||||||| ||||||||| Sbjct 469681 AGAGCAAACACGCGAAGTCGGTGTGCATGCCCTCATCGCGGGAGATGAGCTCGTTGGAGA 469622 Query 48183 AGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAG 48242 | ||| |||||||| | || | || ||||||||||| || | ||||| || |||| Sbjct 469621 ACGTGAGGCCAGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGATCCAG 469562 Query 48243 AGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCT 48302 |||||||||| |||||||| || ||||| ||| |||| | ||| |||| | || | || Sbjct 469561 AGAAGAAGATACCCTCCACAGCGGCGAAGGCGATGAGACGCTCGGCGAACGCAGACTCCT 469502 Query 48303 TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTA 48362 |||| || |||||| ||| |||||||| ||||||||||||||||| || || || || | Sbjct 469501 TGTCGGAAATCCAGCGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTGTCGA 469442 Query 48363 TGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCT 48419 |||| |||||| | || || || | | | |||| | ||||| | |||| ||| Sbjct 469441 TGGCGTCGAAGAGGTGCTCGCGCTGAGCGGGGTCCTTGATGTAGGTATCAATGAGGAGC- 469383 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 | ||| |||| ||||| | ||||| || |||||||| ||||||||| | | Sbjct 469382 --GAGTAGGTCTCCGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGCG 469325 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCAT 48539 | || |||| || || |||| || ||||| | || ||||| ||||| || || | Sbjct 469324 CTTCCGCTGCCTGAACCTCGTTGGAAAACCTCTCGACGAGGTTCTCGTTGACGATGCCGT 469265 Query 48540 CTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG-- 48597 | || || || ||||| || ||||| || || ||| | ||||| | || |||||| Sbjct 469264 CCGACGCGGCGAAGAATGCGAGGACGTGCGAAATGAAGTATCGCTCATCGTCGGTGAGCT 469205 Query 48598 -AGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACG 48656 |||||| | || | || ||| || ||||| || || | ||||||||||||| Sbjct 469204 TGTTGTTCCAGTCGTGCAGATCCTTGGACAAGTCCATCTCCTCTGCCGTCCAGAAGGACG 469145 Query 48657 CGAGTGCTTTTTTGTACAT 48675 | || || |||||||| Sbjct 469144 CCTCAGCCTTCTTGTACAT 469126 Score = 269 bits (298), Expect = 5e-67 Identities = 510/748 (68%), Gaps = 22/748 (3%) Strand=Plus/Plus Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013 |||||| | ||||||||| |||||||||| | |||| || ||||||||| ||| Sbjct 467015 AGCAGGCGGTCCGCGACGAACTCGATGTACTGGCACATCAGCCGCGCGTTCATGCCGATG 467074 Query 48014 AGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACA 48073 || || || || | |||| ||||| ||||||||||| |||| ||||| || | || Sbjct 467075 AGCGAGACCGGGAGCGCCTCCGTGAGGAACTCCTTCTCGATCTCGACGGCCTCGGCGACG 467134 Query 48074 ATCTGCTTAACGCGGGACTCTGAGGGTTTGTT-----GCGCAGGTGCTTGGCATAGAGCA 48128 || | |||||| | |||| | ||| ||||| | | |||| | Sbjct 467135 ATGCGGAGCACGCGGC-----GGGGGTGCGGCCGCCGGCGGAGGTGGTGGA---AGAGGA 467186 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 ||| || ||||| | |||| ||| ||||| ||| ||||||| |||||||||| || Sbjct 467187 GGCACGCGAAGTCGGTATGCATGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGA 467246 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 | || ||||||| ||| | || ||||||||||| || || ||||| ||||| ||||||| Sbjct 467247 GGCCGGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAACGAGCCGGAGAAGA 467306 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 ||| |||||| || || ||||||||| ||||| ||| | |||| || || ||| | Sbjct 467307 AGACGCCCTCGACGGCGGCGAACGCGACGAGCCGCTCCGCAAAAGCAGAACGCTCGTCCG 467366 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| || |||||||| ||||||||||||||||| || || || || ||||| Sbjct 467367 CGATCCACCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGTATGGTGTCGATGGCGT 467426 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGT 48425 |||||| || ||| | | ||| | ||||| |||| ||| | || Sbjct 467427 CGAAGAGGAAGGCGCGCTCGGCGGGGTCGCGGATGTAGGTGTCGATGAGGAGC---GAGT 467483 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 || |||| | |||||| ||||| || ||| ||||| || || ||| | ||||| Sbjct 467484 ACGTCTCGGCGTGCACGTTCTCGATCATGATTTGGAAGCCATAAAAGCAGCGCGCCTCCG 467543 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 ||||||| || ||||||| | |||| || || || || || || ||||| || | Sbjct 467544 CGGCCTGCACCTCGTTGGAGAAGCGTTCCACGAGGTTTTCGTTCACGATGCCATCCGAGG 467603 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCAT 48602 | || || ||||| || || | | ||| || |||||||||| | | || ||| Sbjct 467604 CGGCGAAAAAGGCGAGCACGTAGGAGATGAAGTGCCGCTCGTTGTCGTTTAGCTTGCCAT 467663 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 ||||| || | ||| | |||| | || || || ||||| |||||||| | | Sbjct 467664 TCCAGTCCATAAGGTCATACGAGAGGTTAATCTCCTCGACTGTCCAAAAGGACGCTTGGG 467723 Query 48663 CTTTTTTGTACATGCCCCATATGTCCGG 48690 | | |||||||| |||||| | ||| Sbjct 467724 CAGTCTTGTACATCTGCCATATCTACGG 467751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931529236887040