Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq29 192 8e-44 seq5 174 2e-38 seq4 163 4e-35 seq9 102 1e-16 >seq29 Length=419596 Score = 192 bits (212), Expect = 8e-44 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| |||||||| || ||| | || || || || |||||||||||||| ||||||| Sbjct 160750 GTATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGT 160809 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| ||||| ||| |||| || ||||||||||| ||||| |||||||| ||||| | Sbjct 160810 CCGACACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATTCCGCCCGACC 160869 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| || | ||||| || || || ||||| || ||||| || || || | || |||| Sbjct 160870 AGCAGCGCTTGATTTTCGCAGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGACTACA 160929 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 || | || |||||||| || || ||||| ||||| | ||||| || || Sbjct 160930 ACATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGTCTTCGCGGAGG 160978 >seq5 Length=1334057 Score = 174 bits (192), Expect = 2e-38 Identities = 252/356 (71%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| || ||||| || ||||| | | ||||||||||||| || || || | | | Sbjct 394945 CCCGAGGAGATTTCCTCCATGGTCCTCACGAAGATGAAGGAGATCGCCGAGTCATACCTC 395004 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 ||| || || | || || || || || || || ||||||| || || ||||| Sbjct 395005 GGTGGCACCGTCACCTCCGCTGTCGTCACCGTCCCCGCCTACTTCAACGACTCGCAACGT 395064 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 |||||||| |||||||| | | | || ||||||| ||| || | || ||||| || Sbjct 395065 CAGGCGACTAAGGACGCGGGTACCATCTCGGGTCTCAACGTCCTCCGTATCATCAACGAG 395124 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || ||||| || || || || ||||| |||||||| | | | || || || Sbjct 395125 CCCACTGCGGCCGCCATCGCGTACGGTCTCGACAAGAAGACCGTTGGCGAGCGCAACGTC 395184 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | ||||| ||||||||||| || || || ||||| || || || | || || | ||| Sbjct 395185 CTCATCTTCGATCTCGGTGGAGGAACCTTCGATGTGTCGCTCCTGACCATCGAGGAGGGT 395244 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| || ||||| || |||||||| ||||| || |||||||| || ||||| Sbjct 395245 ATCTTCGAGGTCAAGGCCACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTCGA 395300 Score = 132 bits (146), Expect = 6e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 195332 TGTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGT 195391 || || ||||| ||||||||||||||||| ||||| ||| | || ||||| || ||||| Sbjct 394591 TGCGTCGGTGTCTGGCAAAATGATCGTGTTGAGATCATCGCCAACGACCAGGGTAACCGC 394650 Query 195392 ACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTCGTTGGAGATGCCGCAAAA 195451 || || || || ||||| ||||| || || | || || | | || |||||||| || Sbjct 394651 ACGACCCCCTCATACGTCGCCTTCACCGACACCGAGCGGTTGATCGGCGATGCCGCGAAG 394710 Query 195452 AATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGC 195511 || ||| || |||||||| ||| || ||||| ||||| |||||||| || || ||| Sbjct 394711 AACCAGGTCGCGATGAACCCCCACAACACCGTCTTCGACGCCAAGCGTCTCATCGGCCGC 394770 Query 195512 AAGTTTTCGGA 195522 ||||| |||| Sbjct 394771 AAGTTCGCGGA 394781 >seq4 Length=1487122 Score = 163 bits (180), Expect = 4e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| ||||| ||||| || | || || || || ||||| || ||||| ||||| | Sbjct 24062 GTATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACGATCACGCTGGAGGTCGAGTCTT 24003 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| ||||| ||| |||| ||||||||||| |||||||| || || || || || | Sbjct 24002 CTGACACCATCGACAACGTCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCGCCAGACC 23943 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| || ||||| || || || || ||||| || ||||| || || | | || |||| Sbjct 23942 AGCAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACGTTGTCGGACTACA 23883 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTG 172069 || | || ||||||||||| || ||||||| Sbjct 23882 ACATCCAGAAGGAGTCTACCCTTCACCTTG 23853 Score = 163 bits (180), Expect = 4e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || ||||||||||||||||||||||| Sbjct 24288 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCGTCG 24229 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || | || || ||||| || || ||||| ||||| || ||||| ||| Sbjct 24228 GACACCATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 24169 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || ||||| || || || || ||||| || ||||| || || | | || |||||| Sbjct 24168 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACGTTGTCAGACTACAAC 24109 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| || || || || ||||| | || || || ||| Sbjct 24108 ATCCAGAAGGAGTCCACCCTCCATCTCGTTCTGCGCCTCCGTGGCGGT 24061 Score = 154 bits (170), Expect = 2e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || || || || || || || || || || |||||||||| Sbjct 23556 GTGGTATGCAGATCTTCGTCAAGACGCTCACAGGGAAGACCATTACGCTGGAGGTTGAGT 23497 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| ||| | || || ||||| || || ||||| || ||||| || | Sbjct 23496 CCTCGGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCCCCGG 23437 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 | |||||||| ||||| || ||||| || ||| | || || || || || ||| | || | Sbjct 23436 ACCAGCAACGTCTTATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCCGACT 23377 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTG 172069 ||||| | || |||||||| || || ||||||| Sbjct 23376 ACAACATCCAGAAGGAGTCGACGCTTCACCTTG 23344 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||||||||| || || || || || || || || |||||| | ||||| ||||| | Sbjct 23781 GTATGCAAATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCTTGGAGGTCGAGTCTT 23722 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | ||||| ||||| ||| |||| || ||||| ||||| ||||| || || || || || | Sbjct 23721 CCGACACGATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGACC 23662 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| || | || || || || || ||| | || || |||||||| || | || |||| Sbjct 23661 AGCAGCGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGTACTCTGTCGGACTACA 23602 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || |||| |||||||| || || ||| | || || | || || |||||| Sbjct 23601 ACATTCAGAAGGAGTCCACGCTTCACTTGGTCCTTCGTCTGCGCGGTGGT 23552 >seq9 Length=891578 Score = 102 bits (112), Expect = 1e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || |||||||| || || || |||||||||||||||||||| || Sbjct 319641 ATGCAGATTTTCGTCAAGACCCTTACGGGCAAGACCATCACCCTCGAGGTTGAGTCCTCG 319700 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| ||||| || |||| |||||||| ||||| ||||| || Sbjct 319701 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGG 319744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657859883676320