Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq8 215 6e-50 seq4 113 6e-19 seq45 87.8 2e-11 seq2 87.8 2e-11 seq66 86.0 8e-11 >seq8 Length=958091 Score = 215 bits (238), Expect = 6e-50 Identities = 193/242 (80%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||| ||||||||||| ||||||| |||||| ||||| |||||||| |||||||||| Sbjct 466895 GCCATGGCGTACTCGGACACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGTGAGCGAGATC 466954 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||| | |||||||| | || ||||||||| ||| ||||||| || Sbjct 466955 ATGTCCATGAAGTCAAACGGGTTCGCCGCGCGGTAGTGCTTCTCGTTCCCGAGCGCGACG 467014 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||| ||||| |||||||||||||||||||| || | ||||||||||||||| Sbjct 467015 AGCAGGCGGTCCGCGACGAACTCGATGTACTGGCACATCAGCCGCGCGTTCATGCCGATG 467074 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 |||| ||||| |||| ||| | | ||||| ||||||||||||||||||||| ||| | Sbjct 467075 AGCGAGACCGGGAGCGCCTCCGTGAGGAACTCCTTCTCGATCTCGACGGCCTCGGCGACG 467134 Query 868931 AT 868932 || Sbjct 467135 AT 467136 Score = 174 bits (192), Expect = 2e-37 Identities = 214/292 (73%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 869172 TATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGC 869231 ||||| || |||||||| ||| | |||||| || | ||||||||||||||| | Sbjct 467202 TATGCATGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAGCC 467261 Query 869232 CGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGG 869291 |||||||||||||||| ||||||||| ||| ||| ||||| |||| ||||||||||| Sbjct 467262 CGCGCTTCTTGAGCCAGAAGATGGCGGCGAACGAGCCGGAGAAGAAGACGCCCTCGACGG 467321 Query 869292 CGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCA 869351 |||| || ||| ||||||||| ||||| | | | ||| | ||||||| | Sbjct 467322 CGGCGAACGCGACGAGCCGCTCCGCAAAAG---CAGAACGCTCGTCCGCGATCCACCGGA 467378 Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGT 869411 |||||||||||||| ||| | | | || | |||||||||||| |||||| | Sbjct 467379 GGGCCCAGTCGGCCTTCTTCTTGATGCAGGGTATGGTGTCGATGGCGTCGAAGAGGAAGG 467438 Query 869412 CCTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||||| ||||| || ||||||||||| |||||||| || ||||| Sbjct 467439 CGCGCTCGGCGGGGTCGCGGATGTAGGTGTCGATGAGGAGCGAGTACGTCTC 467490 Score = 154 bits (170), Expect = 2e-31 Identities = 208/288 (72%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || || ||||| ||| | |||||| || | |||||| ||||| | ||| |||||| Sbjct 469652 CCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCAGGCATCAAGCCACGCTTC 469593 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| | ||| || ||||| ||||| ||||| || ||||| ||| Sbjct 469592 TTGAGCCAGAAGATGGAGGCGAAGGATCCAGAGAAGAAGATACCCTCCACAGCGGCGAAG 469533 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG---ATCCACTTCATCGCC 869356 ||||||| |||||||| || | || |||||||| | ||||| | ||| Sbjct 469532 GCGATGAGACGCTCGGCGAACG----CAG--ACTCCTTGTCGGAAATCCAGCGAAGAGCC 469479 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||||||||| ||| | | | || | |||||||||||| |||||||| || Sbjct 469478 CAGTCGGCCTTCTTCTTGATGCAAGGAATGGTGTCGATGGCGTCGAAGAGGTGCTCGCGC 469419 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTCC 869464 | || |||||||||| ||||| || || |||||||| ||||||||| Sbjct 469418 TGAGCGGGGTCCTTGATGTAGGTATCAATGAGGAGCGAGTAGGTCTCC 469371 Score = 131 bits (144), Expect = 2e-24 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| | ||| || || ||| |||||| |||||||||||||||| |||||||||| Sbjct 470019 GCCTTCGAGTAGTCCGAGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATC 469960 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||| | ||| ||||| | ||||||||||| |||| ||||| | || Sbjct 469959 ATGTCCATGAAATCGAAGGGGTTCGTGACGTTGTAGTGCTTCTCGCCGCCGAGAGCGACG 469900 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || ||||| || || || ||||||||||| ||||||||||| | ||||||||||||| Sbjct 469899 AGGAGGCGATCCGCAACGAACTCGATGTATTGGCACATGAGCTTCGAGTTCATGCCGATG 469840 Query 868871 AGCGC 868875 || || Sbjct 469839 AGTGC 469835 Score = 113 bits (124), Expect = 6e-19 Identities = 177/253 (70%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||||||||| || |||||||||||||| ||| | | | || || | | Sbjct 469372 CCGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAGCGCGCTTCCGCTGCCT 469313 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||| || |||| || | ||||||||| ||||||||||| ||||||| Sbjct 469312 GAACCTCGTTGGAAAACCTCTCGACGAGGTTCTCGTTGACGATGCCGTCCGACGCGGCGA 469253 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGT 869807 | || || ||||||||| || |||| ||||| |||||| ||||| ||||| Sbjct 469252 AGAATGCGAGGACGTGCGAAATGAAGTATCGCTCATCGTCGGTGAGCTTGTTGTTCCAGT 469193 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | || | | ||||| |||||| || ||||||| || ||||| ||||| | Sbjct 469192 CGTGCAGATCCTTGGACAAGTCCATCTCCTCTGCCGTCCAGAAGGACGCCTCAGCCTTCT 469133 Query 869868 TGTACATCTCCCA 869880 ||||||||| ||| Sbjct 469132 TGTACATCTGCCA 469120 Score = 95.1 bits (104), Expect = 1e-13 Identities = 173/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||| | ||||||||| ||| |||||||| |||||| | | |||| || | || || Sbjct 467494 GTGCACGTTCTCGATCATGATTTGGAAGCCATAAAAGCAGCGCGCCTCCGCGGCCTGCAC 467553 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||| || ||| || | | ||||| ||| ||||||||| || |||||||||||| Sbjct 467554 CTCGTTGGAGAAGCGTTCCACGAGGTTTTCGTTCACGATGCCATCCGAGGCGGCGAAAAA 467613 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC--GACA-CCCAGTGGAC 869811 || || |||| ||| ||||| ||||||| |||| | ||| | || ||||| | Sbjct 467614 GGCGAGCACGTAGGAGATGAAGTGCCGCTCGTTGTCGTTTAGCTTGCCATTCCAGTCCAT 467673 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 ||| ||||| | ||||||| | ||||| | || || | ||| | ||||| Sbjct 467674 AAGGTCATACGAGAGGTTAATCTCCTCGACTGTCCAAAAGGACGCTTGGGCAGTCTTGTA 467733 Query 869872 CATCTCCCATA 869882 ||||| ||||| Sbjct 467734 CATCTGCCATA 467744 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG-CCGTG 19111 |||||||| || || || ||||| ||| || ||| | |||||||||||| ||||| Sbjct 954856 ATCGGCGGGACCGTCACCTGCGTCATCCGCGGTGTCCCGTCCGGCCTCGGCGAGCCCGTG 954797 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| ||||||| ||||| ||||| ||||| || |||||||| || |||| Sbjct 954796 -TTCGACAAGCTCGAGGCGAAACTCGCGCACGCGATGCTCTCCATCCCGGCGACGAAGGC 954738 Query 19172 ATTCGAGATTGGCAGCGGGTT 19192 |||||||| ||| ||| || Sbjct 954737 GTTCGAGATCGGCTCCGGCTT 954717 >seq4 Length=1487122 Score = 113 bits (124), Expect = 6e-19 Identities = 302/456 (66%), Gaps = 17/456 (4%) Strand=Plus/Plus Query 733083 CCCGAGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGTG 733142 ||| || | |||||||| | | ||||| ||||| || ||||| ||| | || | | Sbjct 1294048 CCCCAGATCGGCGACAAGTTCGCCTCGCGTCACGGTCAGAAGGGTACCATTGGTATCA-- 1294105 Query 733143 CGCTCCACC--GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGA 733200 | || || ||||||||||| | || ||||| | ||| ||||||||||||| | | Sbjct 1294106 CCTACCGCCAGGAGGACATGCCGT--TCACCGCGGAG-GGCATCACGCCCGACATCATCA 1294162 Query 733201 TCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGG 733260 ||||||| |||||||||||||| || |||||||| || | || ||||| ||||| Sbjct 1294163 TCAACCCCCACGCCATCCCGTCCCGTATGACCATCGGTCACTTGGTCGAGTGTCTCCTCT 1294222 Query 733261 GCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTTTGGCGGCGTCACCN 733320 |||||| || | | ||| || ||||||| |||||||| || | ||||| Sbjct 1294223 CCAAGGTCGCGACGCTCATCGGCAACGAGGGCGACGCTACGCCCTTCACCGACCTCACCG 1294282 Query 733321 NNNNNNNNNNNNNNNNNGAGTTGGCCCGCC---ACGGGTGCGAG-CGCTACGGCAAGGAG 733376 |||| ||||| | || | | || ||| |||| ||| Sbjct 1294283 TCGAGTCCGTGTCCC---AGTTCCTCCGCCAGAAGGGCTACCAGTCGC-GCGGCCTCGAG 1294338 Query 733377 GTGCTCTACCACCCGCACACCGGCGAGCCCATGGCGGCGTTGATCT-TCTCGGCGCCGGT 733435 | | |||||| ||||||||| | || |||| | | | |||||| ||| Sbjct 1294339 ATCATGTACCACGGCCACACCGGCCGGAAGCTGCAGGCGCAGGTGTACCTCGGC-CCGAC 1294397 Query 733436 CTACTACCAGGCCCTCCGGCACGTGGCCATCGACAAGATCCACGCGCGCCCGCGCGGTCC 733495 ||||||||| || |||| ||| ||||||||||||| ||||| | || || || Sbjct 1294398 GTACTACCAGCGGCTGAAGCACATGGTGGACGACAAGATCCACTCGCGCGCACGTGGCCC 1294457 Query 733496 CGTGCAGATGCTCACCAAGCAGCCGGTCGAGGGCCG 733531 |||||||| ||||| |||||||||||||| || Sbjct 1294458 GGTGCAGATCCTCACGCGCCAGCCGGTCGAGGGTCG 1294493 >seq45 Length=241367 Score = 87.8 bits (96), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 ||||| || | ||||| |||| ||||||||||| |||||||| | || | ||||| | Sbjct 41286 GCCTCAGTCGCAATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATGGCCATCGCC 41345 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||||| || || |||||||||||||| ||||| Sbjct 41346 TTGTTGGAGATACCAGTATCAGGGTGCACCTGCTTAAGCAC 41386 Score = 87.8 bits (96), Expect = 2e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1254438 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGAC 1254497 || ||||| |||| || |||| |||||||||||||||||||| | || | ||||| | Sbjct 65996 GCTTCGGTCGCGATACGCTCGAAGATGTCGTTGACAAACGAGTTGAGGATGGCCATCGCC 66055 Query 1254498 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||||| || ||| || ||||| |||||||| || Sbjct 66056 TTGTTGGAGATACCAGTGTCAGGATGCACTTGCTTGAGAAC 66096 >seq2 Length=1603695 Score = 87.8 bits (96), Expect = 2e-11 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 1726697 GCGGCGCG-CACGGCGTCGAGTGCCGTCGCCACGCTCCCGTCGGTGCCGTTCTTGAAGCC 1726755 |||||||| |||| | |||| || | | || | ||||| ||| |||||||||||| Sbjct 1054008 GCGGCGCGGCACG-CATCGATGGCGATACCGACCGTGCCGTCCGTGGAGTTCTTGAAGCC 1054066 Query 1726756 GATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGCGCGC 1726815 ||| || | ||| ||||| | | ||||||||||||||| ||| || |||||||| Sbjct 1054067 CGTGGGCATGGACAGCGCCGAGGTGAGCTCGCGGTGCACCTGCGACTCCGTGGTGCGCGC 1054126 Query 1726816 GCCCACGGCGCCCCACGCCACCAGGTCTGC 1726845 || | ||| ||||||| ||| ||||| || Sbjct 1054127 TCCGATGGCACCCCACGACACGAGGTCCGC 1054156 Score = 86.0 bits (94), Expect = 8e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1628466 CCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAG 1628525 ||| || ||||| || || || || || ||| ||||||||||||||||||||| ||| Sbjct 1472029 CCAGAGGGCGTAGAAAAGATCACGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAG 1471970 Query 1628526 GTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582 ||||| | |||| | ||||||||||| ||||||| |||| ||| || || || Sbjct 1471969 GTCGATGAATTCGAACACATCGGCGTGCCAGGGCTCCAAGTAGATGGCGAACGCTCC 1471913 >seq66 Length=161137 Score = 86.0 bits (94), Expect = 8e-11 Identities = 209/313 (67%), Gaps = 8/313 (3%) Strand=Plus/Plus Query 511996 CGCCGTGCTGGGCATCGAGGCCGCCGTGGCCGTGCTCTTTTCCGAGATCAAGGCCGTCAT 512055 || ||| || || |||||||||||| || | || | |||| || |||||| Sbjct 73394 CGACGTCCTTGGTATCGAGGCCGCCCGCGCTGCTATCATGCGCGAGCTCCGTAACGTCAT 73453 Query 512056 CTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTG 512115 | || ||||| ||||||||||| |||||||| |||||||| |||| ||| Sbjct 73454 CGAGTTCGACGGTTCCTACGTCAACTACCGCCACCTTGCGCTGCTGTGCGACCTGATGAC 73513 Query 512116 CTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTT 512175 ||||| || | ||||| |||| || || || ||||||| || ||| |||| Sbjct 73514 GCATCGCGGGACGCTCATGGCCATCACCCGTCATGGTATCAACCGTGCAGACACCGGCGC 73573 Query 512176 CCTGTCGCGGGCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGC 512235 || ||| || ||||| ||||| ||||| |||||| | || || || || ||| Sbjct 73574 TCTCATGCGTTGTTCATTCGAGGAGACGGTCGAAATCCTCATGGAGGCCGCCGCGGTTGG 73633 Query 512236 CGAGACCGACAAGATCACCGACGGC-TCGGTGACCGAGCCCATCATCCTGGGCCAGACGG 512294 ||||| ||| ||| || ||||| ||| | ||| |||| | | || |||| || Sbjct 73634 CGAGAAGGAC--GATTGCC-ACGGCATCG----CGGAGAACATCCTGTTCGGACAGATGG 73686 Query 512295 CGCCCATCGGCAC 512307 |||| || || || Sbjct 73687 CGCCGATGGGTAC 73699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107114088207002