Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 seq4 107 2e-18 seq29 100 3e-16 >seq2 Length=1603695 Score = 131 bits (144), Expect = 2e-25 Identities = 286/424 (67%), Gaps = 6/424 (1%) Strand=Plus/Minus Query 138557 AAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACG 138616 ||||||| || | || ||||| |||| |||||| |||| || || ||||| || Sbjct 1472990 AAGGCTCGAAGCACTCATTGTTGCCCAAGATCTGACTGGTGGAGGCAGTAGGCATCGGCG 1472931 Query 138617 CCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGA--TTCGTTCCTTGAGCGACGACCA 138674 | || | || || |||| | |||||| || | |||| |||| | | ||| Sbjct 1472930 CGACGAGCAGCGAGTTCCTGAGACCGTGCTGCGCCACCTTCG--CCTTCAAGCTGGCCCA 1472873 Query 138675 GTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGC 138734 |||||| | || |||| | | ||| | |||||||| | | | ||| | || Sbjct 1472872 GTCCCAGAGGTCCGTAGGGGTCACGCCCCAGAGGTCGTACTGAAGCTTGCCCTCAGAGGC 1472813 Query 138735 GGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTC 138794 ||||||||| | ||||| ||||| ||| | | ||||||| ||| ||| ||||| Sbjct 1472812 GGGACTGCCCTTGTACGTCTCGTAGGTACCGTATTGCTGCGCCATCTCACAGCTGGCCTC 1472753 Query 138795 GAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCT 138854 || ||| | | ||| || || || |||||||| |||||| || ||||||| Sbjct 1472752 GACCGCCGCGTGGTAGATGGTCTCAAAGATCTGCTGGTTGAGCTTGCGTGCCTCGGGAGA 1472693 Query 138855 CTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGAC 138914 ||| | |||| || ||| | |||||||||| ||||| |||||||| || || |||| Sbjct 1472692 GTCGAAGGGCAGACGAAGCGCCATGAACGCGTCCGCCAGACCTTGCACACCGACACCGAT 1472633 Query 138915 AGGGCGATGGCGCAGATTTGA-CGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGA 138973 |||||| || |||| || || ||||| || | ||| || || | ||| ||||||| Sbjct 1472632 AGGGCGGTGACGCATGTTGGAGCGCTTA-GCCTCAGGGATTGGGTAGTGGTTGACATCGA 1472574 Query 138974 TGAT 138977 |||| Sbjct 1472573 TGAT 1472570 >seq4 Length=1487122 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || ||||| || || || || || || | || || || | || Sbjct 23779 ATGCAAATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCTTGGAGGTCGAGTCTTCC 23720 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || ||||| || || Sbjct 23719 GACACGATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 23660 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| || ||| ||||||| | | |||| || || ||| Sbjct 23659 CAGCGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGTACTCTGTCGGACTACAAC 23600 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || |||||||| | || ||||||| || Sbjct 23599 ATTCAGAAGGAGTCCACGCTTCACTTGGTCCTTCGTCTGCGCGGTGG 23553 Score = 100 bits (110), Expect = 3e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || |||||||| || || || || | Sbjct 23551 ATGCAGATCTTCGTCAAGACGCTCACAGGGAAGACCATTACGCTGGAGGTTGAGTCCTCG 23492 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 23491 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAG 23432 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || ||||| ||| ||||||| | | | || || || ||| Sbjct 23431 CAACGTCTTATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCCGACTACAAC 23372 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGT 24912 || || ||||| ||||| || || |||||| Sbjct 23371 ATCCAGAAGGAGTCGACGCTTCACCTTGGT 23342 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||| | ||||| || || || ||||| || || || | | Sbjct 24060 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACGATCACGCTGGAGGTCGAGTCTTCT 24001 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || || || || ||||| || || || || Sbjct 24000 GACACCATCGACAACGTCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCGCCAGACCAG 23941 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || |||||||||||| | | |||| || || ||| Sbjct 23940 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACGTTGTCGGACTACAAC 23881 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTGGT 24912 || || ||||| || || || || |||||| Sbjct 23880 ATCCAGAAGGAGTCTACCCTTCACCTTGGT 23851 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 24288 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCGTCG 24229 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 24228 GACACCATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 24169 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || ||||| |||||| | | ||||||| || ||| Sbjct 24168 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACGTTGTCAGACTACAAC 24109 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| || || || || Sbjct 24108 ATCCAGAAGGAGTCCACCCTCCA 24086 >seq29 Length=419596 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | ||||| || || || || ||||| || || | || Sbjct 160752 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 160811 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| || || || || ||||| || Sbjct 160812 GACACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATTCCGCCCGACCAG 160871 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| || || || || ||||| |||||| | | | || || || ||| Sbjct 160872 CAGCGCTTGATTTTCGCAGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGACTACAAC 160931 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | || | || | ||||||||| Sbjct 160932 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGTCTTCGCGGAGGC 160979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895879141680