Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq8 223 5e-52 seq4 125 1e-22 seq2 104 4e-16 seq45 87.8 3e-11 seq66 86.0 1e-10 >seq8 Length=958091 Score = 223 bits (246), Expect = 5e-52 Identities = 247/328 (75%), Gaps = 5/328 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||| || ||||||||||||||| ||||||||| Sbjct 467210 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCGGGCATGAGCCCGCGCTTC 467269 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| |||||||| ||| ||| ||||| |||| ||||||||||||||| || Sbjct 467270 TTGAGCCAGAAGATGGCGGCGAACGAGCCGGAGAAGAAGACGCCCTCGACGGCGGCGAAC 467329 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAG-GCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 ||||||||||||| ||||||| ||| | ||| | ||||||| | ||||| Sbjct 467330 GCGACGAGCCGCTCCGCAAAAG----CAGAACGCTCGTCCGCGATCCACCGGAGGGCCCA 467385 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || ||||| ||| | | |||| | |||||||||||| |||||| | | ||| Sbjct 467386 GTCGGCCTTCTTCTTGATGCAGGGTATGGTGTCGATGGCGTCGAAGAGGAAGGCGCGCTC 467445 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 | | ||||| || |||||||||||||||||||||||| ||||| | ||| | ||| || Sbjct 467446 GGCGGGGTCGCGGATGTAGGTGTCGATGAGGAGCGAGTACGTCTCGGCGTGCACGTTCTC 467505 Query 794640 GATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||| ||| |||||||||||||||||| Sbjct 467506 GATCATGATTTGGAAGCCATAAAAGCAG 467533 Score = 215 bits (238), Expect = 8e-50 Identities = 197/249 (79%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 793892 GACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAG 793951 || ||| ||| |||| |||||| ||||||| |||||| ||||| |||||||| ||| Sbjct 466888 GAAGCCGGCCATGGCGTACTCGGACACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGTGAG 466947 Query 793952 CGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAG 794011 |||||||| ||||| | |||||||| |||| |||||||||||||| |||||| Sbjct 466948 CGAGATCATGTCCATGAAGTCAAACGGGTTCGCCGCGCGGTAGTGCTTCTCGTTCCCGAG 467007 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 || | ||||||||||| |||||||| || |||||||||||||| || |||||||| Sbjct 467008 CGCGACGAGCAGGCGGTCCGCGACGAACTCGATGTACTGGCACATCAGCCGCGCGTTCAT 467067 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 ||||||||||| || || |||| ||| ||| ||||| |||||||||||||||||||| Sbjct 467068 GCCGATGAGCGAGACCGGGAGCGCCTCCGTGAGGAACTCCTTCTCGATCTCGACGGCCTC 467127 Query 794132 GATGATGAT 794140 | || ||| Sbjct 467128 GGCGACGAT 467136 Score = 179 bits (198), Expect = 6e-39 Identities = 218/295 (74%), Gaps = 9/295 (3%) Strand=Plus/Minus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435 |||||| ||||| | ||| |||||||||||||| ||||||| ||| || ||||| Sbjct 469617 GAGGCCAGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGATCCAGAGAA 469558 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 ||||| ||||| || ||||| ||| ||| ||| |||||||| || | ||| | || Sbjct 469557 GAAGATACCCTCCACAGCGGCGAAGGCGATGAGACGCTCGGCGAACG----CAGAC--TC 469504 Query 794496 TTTGTTG---ATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTC 794552 |||| | ||||| | ||||| || ||||| ||| | | | || | ||||| Sbjct 469503 CTTGTCGGAAATCCAGCGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAAGGAATGGTGTC 469444 Query 794553 GATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAG 794612 ||||||| |||||||| || || | |||||||||| |||||| || |||||||| Sbjct 469443 GATGGCGTCGAAGAGGTGCTCGCGCTGAGCGGGGTCCTTGATGTAGGTATCAATGAGGAG 469384 Query 794613 CGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 |||||||||||| ||||||||||| || || ||||||||||| || |||||| Sbjct 469383 CGAGTAGGTCTCCGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCAG 469329 Score = 122 bits (134), Expect = 1e-21 Identities = 132/171 (77%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 793917 ACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAAC 793976 || ||| |||||| |||||||||||||||| ||||||||||| ||||| | ||| Sbjct 470001 ACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATGAAATCGAAG 469942 Query 793977 GGGTTGGC--CGTCAGGTAGTGCTTCTCGCACCCGAG--CGACGCAAGCAGGCGGTCGGC 794032 ||||| | ||| |||||||||||||| ||||| ||||| || ||||| || || Sbjct 469941 GGGTTCGTGACGTT--GTAGTGCTTCTCGCCGCCGAGAGCGACG--AGGAGGCGATCCGC 469886 Query 794033 GACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC 794083 ||||| || ||||| ||||||||||| | ||||||||||||||| || Sbjct 469885 AACGAACTCGATGTATTGGCACATGAGCTTCGAGTTCATGCCGATGAGTGC 469835 >seq4 Length=1487122 Score = 125 bits (138), Expect = 1e-22 Identities = 330/496 (67%), Gaps = 23/496 (5%) Strand=Plus/Plus Query 653648 CCCGAGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGG---CAGC 653704 ||| || | |||||||| | | ||||| ||||| || ||||| ||| | || || | Sbjct 1294048 CCCCAGATCGGCGACAAGTTCGCCTCGCGTCACGGTCAGAAGGGTACCATTGGTATCACC 1294107 Query 653705 GTGCGCTCGACCGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTC 653764 ||| | ||||| ||||||| || ||||| | |||| ||||||||||||| || Sbjct 1294108 TACCGCCAG---GAGGACATGCCGT--TCACCGCG-GAGGGCATCACGCCCGACATCATC 1294161 Query 653765 ATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTG 653824 |||||||| |||||||||||||| || |||||||| || | || | ||| ||||| Sbjct 1294162 ATCAACCCCCACGCCATCCCGTCCCGTATGACCATCGGTCACTTGGTCGAGTGTCTCCTC 1294221 Query 653825 GGCAAGGTGGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTTTGGCGGCGTCACC 653884 |||||| || | | ||| ||| |||||||| || || || || | ||||| Sbjct 1294222 TCCAAGGTCGCGACGCTCATCGGCAACGAGGGCGACGCTACGCCCTTCACCGACCTCACC 1294281 Query 653885 GTNNNNNNNNNNNNNNNNNAGTTGGCCCGCC---ACGGGTGCGAG-CGCTACGGCAAGGA 653940 || |||| ||||| | || | | || ||| |||| || Sbjct 1294282 GT---CGAGTCCGTGTCCCAGTTCCTCCGCCAGAAGGGCTACCAGTCGC-GCGGCCTCGA 1294337 Query 653941 GGTGCTCTACCACCCGCACACGGGCGAGCCCATGGAGGCGTTGATCT-TTTCGGCGCCGG 653999 | | | |||||| ||||| ||| | || ||||| | | | ||||| ||| Sbjct 1294338 GATCATGTACCACGGCCACACCGGCCGGAAGCTGCAGGCGCAGGTGTACCTCGGC-CCGA 1294396 Query 654000 TCTACTACCAGGCCCTGCGCCACGTGGCCATCGACAAGATCCACGCCCGGCCGCGCGGCC 654059 ||||||||| ||| ||| ||| ||||||||||||| | || | || |||| Sbjct 1294397 CGTACTACCAGCGGCTGAAGCACATGGTGGACGACAAGATCCACTCGCGCGCACGTGGCC 1294456 Query 654060 CCGTGCAGATGCTCACCAAGCAGCCGGTCGAGGGCCG--GTCGCGCTCGGGCGGCTTTCG 654117 | |||||||| ||||| |||||||||||||| || |||| | | || || | || Sbjct 1294457 CGGTGCAGATCCTCACGCGCCAGCCGGTCGAGGGTCGTAGTCGTGAT--GGTGGTCTGCG 1294514 Query 654118 CCTCGGAGAGATGGAG 654133 |||||||||||||| Sbjct 1294515 GTTCGGAGAGATGGAG 1294530 >seq2 Length=1603695 Score = 104 bits (114), Expect = 4e-16 Identities = 144/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 2070050 CCGCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTC 2070108 ||||||| |||||||| ||||||||||| ||| ||||||| || || ||| Sbjct 1472750 CCGCCGCGTGGTAGATGGTCTCAAAGATC-TGCTGGTTGAGCTTGCGTGCCTCGGGAGAG 1472692 Query 2070109 TCCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCA 2070166 || | ||||| | | | || |||||||| ||||| || ||||| ||||| || | Sbjct 1472691 TCGAAGGGCAGACGAAGC--GCCATGAACGCGTCCGCCAGACCTTGCACACCGACACCGA 1472634 Query 2070167 TCGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGA 2070226 | || ||||| |||| ||| ||| || ||||| || | ||||||||||||| |||| Sbjct 1472633 TAGGGCGGTGACGCATGTTGGAGCGCTTAGCCTCAGGGATTGGGTAGTGGTTGACATCGA 1472574 Query 2070227 TCACGCGGTTGAGGTTG 2070243 | | ||||||||||||| Sbjct 1472573 TGATGCGGTTGAGGTTG 1472557 Score = 86.0 bits (94), Expect = 1e-10 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||| || || |||| |||| ||| | |||||| | || |||||| |||||| || Sbjct 1471719 GCCGATCCCACCAGCCGTCTTGCTGATCATCGCGCAGTCCTTTAGCGTCGAGTAGATACC 1471660 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 |||||| ||||| |||||||| || || ||||| || | |||||| | || Sbjct 1471659 CTCGATAGAGTCATCCTTCATGGACACCAAGAAGCATGAGCTGAGCTGCGGGTTGGGGGT 1471600 Query 2073777 GCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 ||||||||||| || || |||| ||| Sbjct 1471599 TCCGGCATTGAACAGGGTTGGCGACGC 1471573 Score = 86.0 bits (94), Expect = 1e-10 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 2071878 CCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAG 2071937 ||| ||| |||| || ||||| || || ||| ||||||||||||||||||||| || Sbjct 1472029 CCAGAGGGCGTAGAAAAGATCACGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAG 1471970 Query 2071938 GTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 2071994 ||||| | |||| | ||||||||||| ||||||| |||| ||| || || || Sbjct 1471969 GTCGATGAATTCGAACACATCGGCGTGCCAGGGCTCCAAGTAGATGGCGAACGCTCC 1471913 >seq45 Length=241367 Score = 87.8 bits (96), Expect = 3e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 ||||| || | ||||| |||| ||||||||||| |||||||| | ||| | ||||| Sbjct 41286 GCCTCAGTCGCAATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATGGCCATCGCC 41345 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||||| || || |||||||||||||| ||||| Sbjct 41346 TTGTTGGAGATACCAGTATCAGGGTGCACCTGCTTAAGCAC 41386 Score = 87.8 bits (96), Expect = 3e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 || ||||| |||| || |||| |||||||||||||||||||| | ||| | ||||| Sbjct 65996 GCTTCGGTCGCGATACGCTCGAAGATGTCGTTGACAAACGAGTTGAGGATGGCCATCGCC 66055 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||||| || ||| || ||||| |||||||| || Sbjct 66056 TTGTTGGAGATACCAGTGTCAGGATGCACTTGCTTGAGAAC 66096 >seq66 Length=161137 Score = 86.0 bits (94), Expect = 1e-10 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 434075 CGTACTGGGCATCGAAGCGGCCGTCGCTGTGCTCTTTTCCGAGATCAAGGCCGTGATCTC 434134 ||| || || ||||| || ||| ||||| || | |||| || ||| ||| Sbjct 73397 CGTCCTTGGTATCGAGGCCGCCCGCGCTGCTATCATGCGCGAGCTCCGTAACGTCATCGA 73456 Query 434135 CTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTG 434194 || ||||| ||||||||||| |||||||| |||||||| |||| ||| Sbjct 73457 GTTCGACGGTTCCTACGTCAACTACCGCCACCTTGCGCTGCTGTGCGACCTGATGACGCA 73516 Query 434195 TCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCGGGCCGACCACGGCTTTCT 434254 |||||| || | ||||| |||| || || || ||||||| || ||| |||| ||| Sbjct 73517 TCGCGGGACGCTCATGGCCATCACCCGTCATGGTATCAACCGTGCAGACACCGGCGCTCT 73576 Query 434255 GTCGCGGGCCTCCTTTGAGGAGACTGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGA 434314 ||| || || |||||||| ||||| |||||| | || || || || ||| ||| Sbjct 73577 CATGCGTTGTTCATTCGAGGAGACGGTCGAAATCCTCATGGAGGCCGCCGCGGTTGGCGA 73636 Query 434315 GA 434316 || Sbjct 73637 GA 73638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916213849384334