Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq29 91.5 1e-13 seq4 82.4 5e-11 >seq29 Length=419596 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || |||||||| || || |||||||| || ||||| || || |||| || | || Sbjct 161182 TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGGCCGTCCTCGAGCTGC 161123 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || ||||| || || | |||||||| || |||| | ||| || ||||| || ||| Sbjct 161122 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTC 161063 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| ||| || | ||||| || || || || | ||||||||| || || || Sbjct 161062 GCCTTCA-CATTATCGATCGTGTCCGAAGACTCGACCTCCAACGTGATCGTCTTGCCGGT 161004 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | ||| || || ||||||||||| Sbjct 161003 GAGCGTCTTGACGAAGATCTGCAT 160980 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || || || ||||| | || || | || || || || || Sbjct 160943 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAA 160884 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||| |||||||| || |||| | || || ||||| ||| ||| || | | | Sbjct 160883 AATCAAGCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTGA-CGT 160825 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||| || || || || | ||||| || || || || || || || | Sbjct 160824 TGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 160765 Query 33737 CAAAGATCTGCATA 33750 |||||||||||||| Sbjct 160764 CAAAGATCTGCATA 160751 >seq4 Length=1487122 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||||||| ||||| |||| ||||| || || || || || Sbjct 23360 CTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCGAA 23419 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||| ||||| || | || | || || ||||| || ||| |||| | | Sbjct 23420 GATAAGACGTTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCA-CGT 23478 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||| || || || || | ||| || || || ||||| | ||| || | Sbjct 23479 TGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCCCTGTGAGCGTCTTGA 23538 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 23539 CGAAGATCTGCATA 23552 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || || | ||||| | || |||| || || ||||| || Sbjct 23869 CTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 23928 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| ||| |||| | || || || || ||| || || | | | Sbjct 23929 GATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGA-CGT 23987 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| || || || || | ||||||||| || || || ||||| || | Sbjct 23988 TGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCCGGTCAACGTCTTCA 24047 Query 33737 CAAAGATCTGCATA 33750 | |||||||||||| Sbjct 24048 CGAAGATCTGCATA 24061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702774139520