Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4 123 6e-23 seq29 87.8 4e-12 >seq4 Length=1487122 Score = 123 bits (136), Expect = 6e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || |||||||| |||| || || ||||||||| |||| Sbjct 24045 AAGACGTTGACCGGCAAGACGATCACGCTGGAGGTCGAGTCTTCTGACACCATCGACAAC 23986 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || ||||| ||| ||| || | ||||||||| Sbjct 23985 GTCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCGCCAGACCAGCAGCGTCTTATCTTC 23926 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | || ||| | || |||||| ||||||| |||||| Sbjct 23925 GCCGGCAAGCAGCTGGAGGATGGTCGCACGTTGTCGGACTACAACATCCAGAAGGAGTCT 23866 Query 206365 ACTCTTCACCTTG 206377 || |||||||||| Sbjct 23865 ACCCTTCACCTTG 23853 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||||||||||| || || || || |||| || || || ||| Sbjct 23548 CAGATCTTCGTCAAGACGCTCACAGGGAAGACCATTACGCTGGAGGTTGAGTCCTCGGAC 23489 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| |||||| ||| Sbjct 23488 ACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAGCAA 23429 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || ||||||||||| || || | || | |||| |||||| || Sbjct 23428 CGTCTTATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCCGACTACAACATC 23369 Query 206353 CAGAAAGAGTCTACTCTTCACCTTG 206377 ||||| ||||| || |||||||||| Sbjct 23368 CAGAAGGAGTCGACGCTTCACCTTG 23344 Score = 100 bits (110), Expect = 7e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| |||||||| || || || ||||| ||||| || || ||| ||||| |||| Sbjct 23765 CAAGACGCTCACGGGCAAGACCATCACCTTGGAGGTCGAGTCTTCCGACACGATCGACAA 23706 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || || || || || ||| || | | ||||| Sbjct 23705 CGTCAAGGCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAGCAGCGCTTGATCTT 23646 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| ||||||||||| || ||| | ||| || | || |||||| | ||||| ||||| Sbjct 23645 CGCCGGCAAGCAGTTGGAGGACGGACGTACTCTGTCGGACTACAACATTCAGAAGGAGTC 23586 Query 206364 TACTCTTCAC 206373 || |||||| Sbjct 23585 CACGCTTCAC 23576 Score = 93.3 bits (102), Expect = 1e-13 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 204765 CAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCA 204824 |||||||||| |||||||| ||||||| || ||||| | ||| || | ||||| |||| Sbjct 23853 CAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCA 23912 Query 204825 GCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||| |||||||||||||| || || || Sbjct 23913 GCTGCTTGCCGGCGAAGATAAGACGCTGCTG 23943 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || |||||||| | || || || || ||| Sbjct 24285 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCGTCGGAC 24226 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || ||| ||| || Sbjct 24225 ACCATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 24166 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||||||||| |||||| | || ||||| | || ||| | || |||||| || Sbjct 24165 CGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACGTTGTCAGACTACAACATC 24106 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || || || ||| || | || || Sbjct 24105 CAGAAGGAGTCCACCCTCCATCTCGTTCTGCGCCTCCG 24068 >seq29 Length=419596 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| |||||||| || || |||||||| ||||| || || ||| ||| Sbjct 160983 CAGATCTTCGTCAAGACGCTCACCGGCAAGACGATCACGTTGGAGGTCGAGTCTTCGGAC 161042 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || ||| ||| || Sbjct 161043 ACGATCGATAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAGCAG 161102 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || || | || | | || |||||| || Sbjct 161103 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACGCTCTCGGACTACAACATC 161162 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||| || |||||||| || Sbjct 161163 CAGAAGGAGAGCACCCTTCACCTCGT 161188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181816166523826