Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 125 7e-24 >seq2 Length=1603695 Score = 125 bits (138), Expect = 7e-24 Identities = 387/587 (66%), Gaps = 14/587 (2%) Strand=Plus/Minus Query 146948 AAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACG 147007 ||||||| || ||||||| ||||| || || || |||| || |||||||| || Sbjct 1472990 AAGGCTCGAAGCACTCATTGTTGCCCAAGATCTGACTGGTGGAGGCAGTAGGCATCGGCG 1472931 Query 147008 CCACCAACAATGAATTTCGCAGACCGTAC-GCACGGATGTTGTCCTTCAAAGTTTGCCAG 147066 | || | || || || | ||||||| | || | | || ||||||| | |||| Sbjct 1472930 CGACGAGCAGCGAGTTCCTGAGACCGTGCTGCGCC-ACCTTCGCCTTCAAGCTGGCCCAG 1472872 Query 147067 TCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCG 147126 ||||| | || || |||||| ||| | ||||||||| ||| || | |||| Sbjct 1472871 TCCCAGAGGTCCGTAGGGGTCACGCCCCAGAGGTCGTACTGAAGCTTGCCCTCAGAGGCG 1472812 Query 147127 GGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCG 147186 |||||||| | |||| |||| | |||| ||||||||| |||||||| |||||| Sbjct 1472811 GGACTGCCCTTGTACGTCTCGTAGGTACCGTATTGCTGCGCCATCTCACAGCTGGCCTCG 1472752 Query 147187 AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTC 147246 | ||| | | ||| ||||| || ||| || | ||| || | || || Sbjct 1472751 ACCGCCGCGTGGTAGATGGTCTCAAAGATCTGCTGGTTGAGCTTGCGTGCCTCGGGAGAG 1472692 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| | |||| ||| || || || || || |||| ||| || | |||||| |||||| Sbjct 1472691 TCGAAGGGCAGACGAAGCGCCATGAACGCGTCCGCCAGACCTTGCACACCGACACCGATA 1472632 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTC-GCTATGGGATAGTGGTTGCGATCAAT 147365 || || || |||| |||||| || ||| | || || ||||||||| ||| || Sbjct 1472631 GGGCGGTGACGCATGTTGGAGCGCTTAGC-CTCAGGGATTGGGTAGTGGTTGACATCGAT 1472573 Query 147366 AATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG-AGTTTCTCGAAATCAT 147424 || ||||||||| | || || || | || || || || |||| ||||| | Sbjct 1472572 GATGCGGTTGAGGTTGAAGGCGACCACCTTCG-TAACGTCGTGCAGCTTCTGGAAATTGT 1472514 Query 147425 AAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484 | | || | ||| | | ||| | | |||||||| |||| ||||| || | Sbjct 1472513 ACTTGCCTCCCTCG--ATGAACG----AGGGAAGAGCGATAGAGGCCAAGTTGCAAACAG 1472460 Query 147485 CCGTCTC-TTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTT 147530 | ||||| | ||||| | ||||| ||||||||||| ||| || || Sbjct 1472459 CGGTCTCGTCCGGCG-AGGAGTACTCCACGATTTCGGTGCATAGATT 1472414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476609376962160