Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq6 125 8e-24 >seq6 Length=1235503 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 147232 AGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAG 147291 |||||||| ||||||| ||| |||| | |||||||| |||| || || ||| Sbjct 27847 AGCTGGTCGACGCCCTTGCCGGTATAGTCGGCGTCGCAGTCCTCGTATTGCGCGCCGAAG 27788 Query 147292 TGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCC 147351 |||| ||||||||||||||| || || || |||||||| ||||||| | ||| Sbjct 27787 TGCCGCCACTGGAAGCCGTAAACGGGGCCGAGGTCGCCTTCGCGTCTGTGCCCTAGGCCG 27728 Query 147352 GCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAG 147411 | || ||| || || ||| || | | |||||||||| | ||||| |||||| Sbjct 27727 CGCTTCTCGAGGAAGTCCTTGGAGCCATTGCCGTCCCAGATCTTGATGCCCTTTGCGGAG 27668 Query 147412 AGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTC 147458 |||| ||| ||||| ||| |||| ||| ||||||||| |||||||| Sbjct 27667 AGCTTCTTGGAGTCTGTGCAGCCTTGGACGAACCAGAGGAGCTCCTC 27621 Score = 120 bits (132), Expect = 4e-22 Identities = 206/298 (69%), Gaps = 6/298 (2%) Strand=Plus/Minus Query 146800 GGGTGCGGGTGGTAGCCCTCGAGGGCAAAATCTTCTGCCCTGAAATCGTCTATGTCCTCC 146859 |||||||||| ||||||||| | | |||| || || || ||| ||||| ||| ||| Sbjct 28359 GGGTGCGGGTCGTAGCCCTCCACGACAAAGTCCTCGCTCCGGAAGTCGTCGATGCTCTCG 28300 Query 146860 ACC---CGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATT 146916 ||| ||| | | | ||||||| ||||| || || || | | | ||||| | Sbjct 28299 ACCGTGCGCGGCCA---CCTGAGCTTCGGGAACGGGCGCGGCTCGCGCTCGAGCTGGGTC 28243 Query 146917 TTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCC 146976 | || | || ||||||| | |||||||||||||||| || || | ||| | || Sbjct 28242 CTGAGCGCGTCGACGTGGTCGCGGTAGACGTGCGCGTCGCCGAGCTGGATCACGAGCTCG 28183 Query 146977 CCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATG 147036 ||| | |||| |||||||| ||||||| ||||| || | |||| ||| ||| Sbjct 28182 TGCGGGACGGTGTCGGTGACGTGGGCGACCATGTGCGTGAGGAGGGCGTAGGAGGCGATG 28123 Query 147037 TTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCT 147094 |||||||||| || || || | ||| | || | |||||||| |||| ||||||| Sbjct 28122 TTGAAGGGGATGCCGAGCCCGAGGTCGGCGGAGCGCTGGTACATGAGGCAGGAGAGCT 28065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583485768158400