Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq8 251 1e-60 seq4 116 5e-20 seq2 104 3e-16 >seq8 Length=958091 Score = 251 bits (278), Expect = 1e-60 Identities = 364/505 (72%), Gaps = 8/505 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| | |||||| || | ||| | || ||||||||||| | ||||||| | ||| Sbjct 467746 GATATGGCAGATGTAC-AAGACTGCCCAAGCGTCCTTTTGGACAGTCGAGGAGATTAACC 467688 Query 1455835 TCGGCGCCGACACGGTCCACTGGG-TGTC--GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 || ||| | ||||| || | ||| | |||| ||||||| || |||||| Sbjct 467687 TCTCGTATGACCTTATGGACTGGAATGGCAAGCTAAACGACAACGAGCGGCACTTCATCT 467628 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||| ||||||||||| ||||||| |||||||||||| ||| ||||| | | Sbjct 467627 CCTACGTGCTCGCCTTTTT-CGCCGCCTCGGATGGCATCGTGAACGAAAACCTCGTGGAA 467569 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| || ||||| || | ||||| || | ||||| || ||||| ||| Sbjct 467568 CGCTTCTCCAACGAGGTGCAGGCCGCGGAGGCGCGCTGCTTTTATGGCTTCCAAATCATG 467509 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 ||||| ||| | ||| | || || ||||||||||| |||||||||||| || ||||| Sbjct 467508 ATCGAGAACGTGCACGCCGAGACGTACTCGCTCCTCATCGACACCTACATCCGCGACCCC 467449 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | |||| | | |||||| |||||||||||| | || | | | ||| |||||| Sbjct 467448 GCCGAGCGCGCCTTCCTCTTCGACGCCATCGACACCATACCCTGCATCAAGAAGAAGGCC 467389 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 |||||||| | ||||||| | ||| | || | ||||| ||||||||||||| Sbjct 467388 GACTGGGCCCTCCGGTGGATCGCGGACGAGCG-TTCTGC-TTTTGCGGAGCGGCTCGTCG 467331 Query 1456192 GCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 || |||| |||||||||| |||| ||||| ||| ||| ||||||||| ||||||| Sbjct 467330 CGTTCGCCGCCGTCGAGGGCGTCTTCTTCTCCGGCTCGTTCGCCGCCATCTTCTGGCTCA 467271 Query 1456251 AGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||| ||||||||||| || Sbjct 467270 AGAAGCGCGGGCTCATGCCCGGCCT 467246 Score = 219 bits (242), Expect = 6e-51 Identities = 203/252 (81%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||| ||| ||||||||||||||||||||| ||||| ||| ||| |||| ||||| || Sbjct 467136 ATCGTCGCCGAGGCCGTCGAGATCGAGAAGGAGTTCCTCACGGAGGCGCTCCCGGTCTCG 467077 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 |||||||||||||||| | | ||| |||||||||||||| | | || ||||| ||||||| Sbjct 467076 CTCATCGGCATGAACG-CGCGGCTGATGTGCCAGTACATCG-AGTTCGTCGCGGACCGCC 467019 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||||| |||||||| | |||||||||||||| |||| |||||||| | ||| Sbjct 467018 TGCTCGTCGCGCTCGGGAAC-GAGAAGCACTACCGCGCGGCGAACCCGTTTGACTTCATG 466960 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTG-GCGAGTACGCC 1456761 || ||||||||||| |||||||| ||||| |||||| |||||| |||||||||| Sbjct 466959 GACATGATCTCGCTCACCGGCAAGACGAACTTCTTCGAGAAGCGCGTGTCCGAGTACGCC 466900 Query 1456762 AAGGCCGGCGTC 1456773 | ||||||| || Sbjct 466899 ATGGCCGGCTTC 466888 Score = 217 bits (240), Expect = 2e-50 Identities = 359/511 (70%), Gaps = 14/511 (3%) Strand=Plus/Plus Query 1455772 GCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCG 1455831 || ||| ||| | |||||| || ||||| ||||| ||||| ||||| || |||||| | | Sbjct 469113 GCAGATCTGGCAGATGTAC-AAGAAGGCTGAGGCGTCCTTCTGGACGGCAGAGGAGATGG 469171 Query 1455832 ACCTCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCA 1455888 || | | || | | ||||| ||| | |||||| ||||| | |||| Sbjct 469172 ACTTGTCCAAGGATCTGCACGACTGGAACAACAAGCTCACCGACGATGAGCGATACTTCA 469231 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 | |||||||||||| || || |||||| || |||||||| ||||||||| | | Sbjct 469232 TTTCGCACGTCCTCGCATTCTT-CGCCGCGTCGGACGGCATCGTCAACGAGAACCTCGTC 469290 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | | ||| || ||||| || | || || || | || ||||| |||||||| Sbjct 469291 GAGAGGTTTTCCAACGAGGTTCAGGCAGCGGAAGCGCGCTGCTTCTACGGCTTCCAGATT 469350 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || |||||||||||||| || || |||||| |||||||| Sbjct 469351 ATGATGGAGAACATCCACTCGGAGACCTACTCGCTCCTCATTGATACCTACATCAAGGAC 469410 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 || | || || |||||||| |||||||||||| | || | | | ||| ||| Sbjct 469411 CCCGCTCAGCGCGAGCACCTCTTCGACGCCATCGACACCATTCCTTGCATCAAGAAGAAG 469470 Query 1456129 GCCGACTGGGCGATGAAGTGGAT---CAACAAGGAGGGCCTCGACACTTTGCCGAGCGGC 1456185 ||||||||||| | ||||| | |||||||| || | || |||||||| | Sbjct 469471 GCCGACTGGGCTCTTCGCTGGATTTCCGACAAGGAG----TCTGC-GTTCGCCGAGCGTC 469525 Query 1456186 TCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTT 1456244 || ||| ||| ||||| || ||||| ||||| ||||| || ||| | ||||||| | Sbjct 469526 TCATCGCCTTCGCCGCTGTGGAGGGTATCTTCTTCTCTGGATCCTTCGCCTCCATCTTCT 469585 Query 1456245 GGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||| ||| | ||||| || || Sbjct 469586 GGCTCAAGAAGCGTGGCTTGATGCCTGGCCT 469616 Score = 120 bits (132), Expect = 4e-21 Identities = 149/197 (76%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 1456580 GCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 || ||||||||||||||| | | |||||||||||| ||||| || || || || || | Sbjct 469835 GCACTCATCGGCATGAACTCGAA-GCTCATGTGCCAATACATCGAGTTC-GTTGCGGATC 469892 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACG--GCCAACCCGTTCCCAT 1456697 |||| |||| || |||||| ||| ||||||||||| ||| | ||||| ||| | Sbjct 469893 GCCTCCTCGTCGCTCTCGGCGGCG-AGAAGCACTAC--AACGTCACGAACCCCTTCGATT 469949 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGT 1456756 ||||| ||||||||||| |||||||||||||||| |||||| || || | || | Sbjct 469950 TCATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTCTCGGACT 470009 Query 1456757 ACGCCAAGGCCGGCGTC 1456773 || | ||||| || ||| Sbjct 470010 ACTCGAAGGCTGGTGTC 470026 >seq4 Length=1487122 Score = 116 bits (128), Expect = 5e-20 Identities = 334/498 (67%), Gaps = 27/498 (5%) Strand=Plus/Minus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAG--CGGCCCTCGACCGGCTGCTTG 1600315 |||||||||||| | || | || || | | ||| || |||||||||||||| Sbjct 1294530 CTCCATCTCTCCGAACCGCAGACCACC--ATCACGACTACGACCCTCGACCGGCTGGCGC 1294473 Query 1600316 GTGAGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGC 1600375 ||||| ||||| || ||||| |||| || | ||| ||||||||| ||| ||| | Sbjct 1294472 GTGAGGATCTGCACCGGGCCACGTGCGCGCGAGTGGATCTTGTCGTCCACCATGTGCTTC 1294413 Query 1600376 AGGGCCTGGTAGTAGACCGGCGCCGTAA-AGATCAACGCCTCCATGGGCTCGCCGGTGTG 1600434 || ||||||||| ||| |||| | | | ||||| || | ||||||||| Sbjct 1294412 AGCCGCTGGTAGTACGTCGG-GCCGAGGTACACCTGCGCCTGCAGCTTCCGGCCGGTGTG 1294354 Query 1600435 CGGGTGGTAGAGCACCTCCTTGCCGTAGCG-CTCGCATCCGT---GGCGAGCCAACTCGG 1600490 |||||| | | ||| |||| ||| || | | || | |||| |||| || Sbjct 1294353 GCCGTGGTACATGATCTCGAGGCCGC-GCGACTGGTAGCCCTTCTGGCGGAGGAACTGGG 1294295 Query 1600491 CGGCG-ACATCGTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCG 1600549 || || |||||||||| | || |||||||| |||||||| | | ||| | Sbjct 1294294 ACACGGAC----TCGACGGTGAGGTCGGTGAAGGGCGTAGCGTCGCCCTCGTTGCCGATG 1294239 Query 1600550 CGGCAGGCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGG 1600609 | || |||||| ||||| ||| | || | || |||||||| || |||||| Sbjct 1294238 AGCGTCGCGACCTTGGAGAGGAGACACTCGACCAAGTGACCGATGGTCATACGGGACGGG 1294179 Query 1600610 ATGGCGTGCGGGTTGATCACAATGTCGGGCGTG--GCACCGCCGCGAGGCGACCAGGGCA 1600667 |||||||| |||||||| | |||||||||||| || || |||| || || | |||| Sbjct 1294178 ATGGCGTGGGGGTTGATGATGATGTCGGGCGTGATGC-CCTCCGC--GGTGA--ACGGCA 1294124 Query 1600668 TGTCCTC--GGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAG 1600725 ||||||| || || | | | || | ||| ||||| || ||||| ||||| | | Sbjct 1294123 TGTCCTCCTGGCGGTAGG--TGATACCAATGGTACCCTTCTGACCGTGACGCGAGGCGAA 1294066 Query 1600726 TTTGTCGCCCACCTCGGG 1600743 |||||||| | || ||| Sbjct 1294065 CTTGTCGCCGATCTGGGG 1294048 >seq2 Length=1603695 Score = 104 bits (114), Expect = 3e-16 Identities = 109/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 165750 GCAGACCTGGTCACGTGGGGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGC 165809 || ||||| || ||||||| ||| |||| ||||||||||| ||| |||||||||||| Sbjct 1054156 GCGGACCTCGTGTCGTGGGGTGCCATCGGAGCGCGCACCACGGAGTCGCAGGTGCACCGC 1054097 Query 165810 GAGATGGCGTCGGCGCTGCCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGTG 165869 ||| | | ||||||||| | |||||| |||||||| ||| ||| ||||||| || Sbjct 1054096 GAGCTCACCTCGGCGCTGTCCATGCCCACGGGCTTCAAGAACTCCACGGACGGCACGGTC 1054037 Query 165870 GCGACGGCCCTCGATGCCGTGC 165891 | | ||| |||||| ||||| Sbjct 1054036 GGTATCGCCATCGATG-CGTGC 1054016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177781685737572