Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4 111 1e-19 seq29 104 2e-17 >seq4 Length=1487122 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| |||||| ||||||||||| || | || || || |||| ||| Sbjct 23571 ACCAAGTGAAGCGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGTCCGTCCTCC 23630 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | |||||| || || || ||||| ||||||||||| | ||| | | ||||||||| | Sbjct 23631 AACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGG 23690 Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||| | |||| | | ||||||| || || ||||||| ||||| || || Sbjct 23691 ATCTTCGCCTTGA-CGTTGTCGATCGTGTCGGAAGACTCGACCTCCAAGGTGATGGTCTT 23749 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || || || || || ||||| Sbjct 23750 GCCCGTGAGCGTCTTGACGAAGATTTGCAT 23779 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | ||| || || | || ||||||||||| || || || Sbjct 23869 CTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 23928 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | |||||| ||| ||||| ||| | || Sbjct 23929 GATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGA-CGT 23987 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || || ||||||| ||||||||| || || ||||| || |||| Sbjct 23988 TGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCCGGTCAACGTCTTCA 24047 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 24048 CGAAGATCTGCAT 24060 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | ||| || || | || || |||||||| || || || Sbjct 24097 CTCCTTCTGGATGTTGTAGTCTGACAACGTGCGACCATCCTCGAGCTGCTTGCCGGCGAA 24156 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 24157 GATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTAACATT 24216 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| ||| || ||||| | |||||||| || ||||| | || || || Sbjct 24217 GTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGAC 24276 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 24277 GAAGATCTGCAT 24288 >seq29 Length=419596 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || |||||||| || | | || || |||| || |||||||| || Sbjct 161176 GTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGGCCGTCCTCGAGCTGCTTGCCG 161117 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || || | ||||||||||| | || | | |||||||||| |||||| |||| Sbjct 161116 GCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATCTTCGCCTTC 161057 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | |||||| || || ||||||| ||||||||| || || || | || Sbjct 161056 ACATTATCGATCGTGTCCGAAGACTCGACCTCCAACGTGATCGTCTTGCCGGTGAGCGTC 160997 Query 35720 TTCACAAATATCTGCAT 35736 || || || |||||||| Sbjct 160996 TTGACGAAGATCTGCAT 160980 Score = 102 bits (112), Expect = 7e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || || |||||||| || || || Sbjct 160943 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAA 160884 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | |||| || ||||||||| ||||| ||| | || Sbjct 160883 AATCAAGCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCTTGAATCTTCGCCTTGA-CGT 160825 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| ||| || ||||| | ||||| || || || ||||| || || | Sbjct 160824 TGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 160765 Query 35724 CAAATATCTGCAT 35736 |||| |||||||| Sbjct 160764 CAAAGATCTGCAT 160752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791875714480