Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq29 152 5e-32 seq4 125 7e-24 seq13 89.7 5e-13 seq9 86.0 6e-12 >seq29 Length=419596 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | |||||||| || || || ||||| || ||||||||||| | Sbjct 160978 CCTCCGCGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 160919 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || |||||||| |||||||| |||||||| |||||||| |||||||| Sbjct 160918 AGAGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGCTGGTCGGGCGGA 160859 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || |||||||| || ||||| ||| | ||||||||||| || || Sbjct 160858 ATGCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 160799 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| || || || || || || ||||| Sbjct 160798 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 160752 >seq4 Length=1487122 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| |||| ||||| || || ||||| ||||| || ||||||||||| | | Sbjct 24062 CCGCCACGGAGGCGCAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAC 24121 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 ||| ||| || || |||||||| ||||| || || || | ||||||||| |||||||| Sbjct 24122 AAC-GTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGG 24180 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||| || || || || || || || || ||| | ||||| ||||| || || Sbjct 24181 GATGCCCTCCTTGTCCTGGATCTTCGCCTTAACATTGTCGATGGTGTCCGACGACTCAAC 24240 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || | || || ||||| || ||||| Sbjct 24241 CTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 24288 Score = 109 bits (120), Expect = 6e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 134508 AGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTGAGAGTCGTCGAG 134566 ||||| || || || ||||| || |||||||||| || |||| ||| || || || || Sbjct 23855 AGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAAC-GTGCGACCATCCTCCAG 23913 Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| ||||| || || || | ||||||||| || ||||| || || || || || ||||| Sbjct 23914 CTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTGAAT 23973 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 || ||||| ||| | ||||| || || || || || || || || || || || Sbjct 23974 CTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCC 24033 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || || ||||| || ||||| Sbjct 24034 GGTCAACGTCTTCACGAAGATCTGCAT 24060 Score = 105 bits (116), Expect = 7e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGT--GAGAGTCGTCGAGC 134567 ||| |||||||| ||||| ||||||||||||| || || | || | ||| || | | Sbjct 23576 GTGAAGCGTGGACTCCTTCTGAATGTTGTAGT--CCGACAGAGTACGTCCGTCCTCCAAC 23633 Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 || ||||| || || ||||| |||||||| || || || || || || || ||||| || Sbjct 23634 TGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATC 23693 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || ||||| ||| | |||||||| || || || || | || ||||| || || Sbjct 23694 TTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCCAAGGTGATGGTCTTGCCC 23753 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || ||||| |||||||| Sbjct 23754 GTGAGCGTCTTGACGAAGATTTGCAT 23779 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 134508 AGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGC 134567 ||||| ||||| || ||||| || |||||||||||| | ||| | ||| || | | Sbjct 23346 AGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAAC 23405 Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 || || || || || || | ||| ||||| || || || || || || || || || || Sbjct 23406 TGCTTCCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATC 23465 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || || || ||| | ||||| || || || || || || |||||||| || || Sbjct 23466 TTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCCCT 23525 Query 134688 GTTAAAGTTTTAACGAAAATTTGCAT 134713 || | || || ||||| || ||||| Sbjct 23526 GTGAGCGTCTTGACGAAGATCTGCAT 23551 Score = 84.2 bits (92), Expect = 2e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| || | |||||||| || ||||| ||||| || ||||||||||| | | Sbjct 24290 CCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 24349 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | ||| | ||| |||||||| ||||| || || |||| |||||||| ||||| || Sbjct 24350 AGC-GTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGAGG 24408 Query 134606 TATGC 134610 |||| Sbjct 24409 GATGC 24413 >seq13 Length=709687 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| ||||| || ||||| ||||| || ||||||||||||| | ||| | ||| || Sbjct 147990 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCCTC 148049 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGC 134610 |||||| ||||| || || |||| ||||||||| ||||| || |||| Sbjct 148050 GAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGC 148096 >seq9 Length=891578 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || ||||| ||||| || ||||||||||||| | |||| | Sbjct 319916 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGG 319857 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGC 134610 || |||||||| ||||| || || |||| |||||||| ||||| || |||| Sbjct 319856 CCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGC 319802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396466851120