Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq8 113 6e-20 >seq8 Length=958091 Score = 113 bits (124), Expect = 6e-20 Identities = 287/426 (67%), Gaps = 12/426 (3%) Strand=Plus/Plus Query 129838 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGAT 129897 ||| || || |||| |||| |||| ||||||| ||||| | | |||||| ||||| Sbjct 467014 GAGCAGGCGGTCCGCGACGAACTCGATGTACTGGCACATCAGCCGCGCGTTCATGCCGAT 467073 Query 129898 GAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCA 129956 ||| | || |||||||| ||| || |||| ||||||| || || || || || | Sbjct 467074 GAGCGAGACC-GGGAGCGCCTCCGTGAGGAACTCCTTCTCGATCTCGACGGCCTCGGCGA 467132 Query 129957 CGATGGCGTGAATG--GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC-CA 130013 ||||| | | | | | |||| || | ||| | | |||||| || Sbjct 467133 CGATGCGGAGCACGCGGCGGGGGTGC--GGCCGCCGGCGGAGGTGGTGGAAGAGGAGGCA 467190 Query 130014 CGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGAC 130073 || | || || || | |||||||| ||||||||||| || || ||||| || | Sbjct 467191 CG-CGAAGTCGGTATGCATGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGC 467249 Query 130074 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGA 130133 | |||||||| || |||||||| | |||||| || || || ||||| |||||||||| Sbjct 467250 CGGGCATGAGCCCGCGCTTCTTGAGCCAGAAGATGGCGGCGAACGAGCCGGAGAAGAAGA 467309 Query 130134 TCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGT-ATC 130191 ||||| || |||||||| | ||| ||||| ||||| ||| | || | || | Sbjct 467310 CGCCCTCGACGGCGGCGAACGCGACGAGCCGCTCCGCAAA--AGCAGAACGCTCGTCCGC 467367 Query 130192 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 130251 | |||| | ||||| | ||||| |||| ||| || || | ||| | ||| || || Sbjct 467368 GATCCACCGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGTATGGTGTCGATGGCGTC 467427 Query 130252 AAAGAG 130257 ||||| Sbjct 467428 GAAGAG 467433 Score = 113 bits (124), Expect = 6e-20 Identities = 331/504 (66%), Gaps = 11/504 (2%) Strand=Plus/Minus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 ||||| || ||||||||||| || || ||||| || || ||||| | || |||||| Sbjct 469652 CCCTCATCGCGGGAGATGAGCTCGTTGGAGAACGTGAGGCCAGGCATCAAGCCACGCTTC 469593 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || || |||||||||||||| ||||||||| ||||| Sbjct 469592 TTGAGCCAGAAGATGGAGGCGAAGGATCCAGAGAAGAAGATACCCTCCACAGCGGCGAAG 469533 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGTATCAAA-CCACTTCATCGCCCAC 130210 || | ||||||||| || || | |||| |||| ||| ||| | ||||| Sbjct 469532 GCGATGAGACGCTCGGCGAACG---CAGACTCCTTGTCGGAAATCCAGCGAAGAGCCCAG 469476 Query 130211 TGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCT 130270 | ||||| |||| ||| || || | ||| | ||| || || ||||| | || | Sbjct 469475 TCGGCCTTCTTCTTGATGCAAGGAATGGTGTCGATGGCGTCGAAGAGGTGCTCGCGCTGA 469416 Query 130271 GATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCAT-TTC 130329 | || || |||||||| |||| ||||| || || || || |||| | | | Sbjct 469415 GCGGGGTCCTTGATGTAGGTATCAATGAGGAGCGAGTAGGTCTCCGAGTGGATGTTCTCC 469356 Query 130330 ATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCAAA 130389 || || ||| | ||||||| |||||||||| | ||| ||||| | | ||| Sbjct 469355 ATCAT-AATCTGGAAGCCGTAGAAGCAGCGCGCTTCCGCTGCCTGAACCTCGTTGGAAAA 469297 Query 130390 ATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATA 130449 | | || ||||| || || || || ||| | || || || || |||| | Sbjct 469296 CCTCTCGACGAGGTTCTCGTTGACGATGCCGTCCGACGCGGCGAAGAATGCGAGGACGTG 469237 Query 130450 CTTTATGAATTTCTGTTCATTCTCGTTCAG---GGTCTTCCAGTCGTCAAGATCCTTCGA 130506 | ||||| | | |||| ||| | || | | |||||||||| |||||||| || Sbjct 469236 CGAAATGAAGTATCGCTCATCGTCGGTGAGCTTGTTGTTCCAGTCGTGCAGATCCTTGGA 469177 Query 130507 GAGATCTACCTCCTCCGCAGTCCA 130530 | || | |||||| || ||||| Sbjct 469176 CAAGTCCATCTCCTCTGCCGTCCA 469153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432834485360