Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4 123 8e-23 seq5 89.7 2e-12 >seq4 Length=1487122 Score = 123 bits (136), Expect = 8e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| |||||||| || || || || || || || || || || ||||| || | Sbjct 23853 CAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCA 23912 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || || ||||| ||||| ||||| || || || ||||| || |||||||||| Sbjct 23913 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTGAA 23972 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || || | ||||| | || || || || || | ||||| | Sbjct 23973 TCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGC 24032 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| | || || || || |||||||| Sbjct 24033 CGGTCAACGTCTTCACGAAGATCTGCAT 24060 Score = 114 bits (126), Expect = 4e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| ||||| || ||||| || || || || || || || | || || || || || | Sbjct 23344 CAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCA 23403 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || || ||||| ||||| ||||||||||| || || ||||| || || || ||||| | Sbjct 23404 ACTGCTTCCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGA 23463 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || || || || |||| || || | ||||| || || |||| ||||| | Sbjct 23464 TCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCC 23523 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || || |||||||| Sbjct 23524 CTGTGAGCGTCTTGACGAAGATCTGCAT 23551 >seq5 Length=1334057 Score = 89.7 bits (98), Expect = 2e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 349231 TTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAG 349290 ||| || | ||| ||||||||||||||||| || || || || || || || |||||| | Sbjct 394590 TTGCGTCGGTGTCTGGCAAAATGATCGTGTTGAGATCATCGCCAACGACCAGGGTAACCG 394649 Query 349291 AACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCAAA 349350 || || || |||||||| || || ||||| || ||||| |||| || ||| | || || Sbjct 394650 CACGACCCCCTCATACGTCGCCTTCACCGACACCGAGCGGTTGATCGGCGATGCCGCGAA 394709 Query 349351 AAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGG 349407 || || | || || || | || || || || || || ||||| || || || Sbjct 394710 GAACCAGGTCGCGATGAACCCCCACAACACCGTCTTCGACGCCAAGCGTCTCATCGG 394766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515248459255718