Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq8 167 3e-36 seq2 111 2e-19 seq85 91.5 2e-13 >seq8 Length=958091 Score = 167 bits (184), Expect = 3e-36 Identities = 347/512 (68%), Gaps = 20/512 (4%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || || |||| ||||||||||| | ||||||||||| | ||| ||||||| | Sbjct 469631 TCGTTGGAGAACGTGAGGCCAGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAGGCG 469572 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||| ||| ||||||||| || || ||| || ||||||| || || | |||||| Sbjct 469571 AAGGATCCAGAGAAGAAGATACCCTCCACAGCGGCGAAGGCGATGAGACGCTCGGCGAAC 469512 Query 74910 GGTGCATC------GGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA 74963 | | || |||| ||||| ||||||| || || || |||| | Sbjct 469511 GCAGACTCCTTGTCGGAA---ATCCAGCGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAA 469455 Query 74964 GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTT--CGGGATCCTTGACGAGCT 75021 || | || ||||| || | ||||||| ||| | || |||| ||||||| | Sbjct 469454 GGAATGGTGTCGATGGCGTCGAAGAGG--TGCTCGCGCTGAGCGGGGTCCTTGATGTAGG 469397 Query 75022 TGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGT 75081 | ||||| | || ||||| |||||||| || || ||| | | |||| | ||| Sbjct 469396 TATCAATGAGGAGCGAGTAGGTCTCCGAGTGGATGTTCTCCATCATAATCTGGAAGCCGT 469337 Query 75082 AGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCA 75141 |||| | ||||| || || ||| || || || ||||| || | ||| ||||| Sbjct 469336 AGAAGCAGCGCGCTTCCGCTGCCTGAACCTCGTTGGAAAACCTCTCGACGAGGTTCTCGT 469277 Query 75142 TGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCAT 75201 |||||||||||||||| |||||||| || || || || || |||| ||||||| Sbjct 469276 TGACGATGCCGTCCGACGCGGCGAAGAATGCGAGGACGTGCGAAATGAAGTATCGCTCAT 469217 Query 75202 CGTCAGTGAG---TTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCG 75258 |||| ||||| |||| ||| || | ||| ||| | ||| || |||||||| ||| Sbjct 469216 CGTCGGTGAGCTTGTTGTTCCAGTCGTGCAGATCCTTGGACAAGTCCATCTCCTCTGCCG 469157 Query 75259 TCCAGAA--ACTCCCAATCGCCTTTTTGTACA 75288 ||||||| || || | ||||| ||||||| Sbjct 469156 TCCAGAAGGACGCCTCA--GCCTTCTTGTACA 469127 >seq2 Length=1603695 Score = 111 bits (122), Expect = 2e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 ||||| |||||| | || | |||||||| || |||||||| || | | || || ||| Sbjct 1471820 GGGACCAACGGCTACTCCAACGGAATCGTTCCCATGCTCCGTGTTTACGACGCGACAGCC 1471879 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || |||||| | ||||||||| ||||| || |||||||||||||| | ||||| Sbjct 1471880 CGTTACGTCGATCAGGGTGGTAACAAGCGGCCTGGAGCGTTCGCCATCTACTTGGAGCCC 1471939 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||||||||| | | || || |||| || || ||| || || | || ||| | Sbjct 1471940 TGGCACGCCGATGTGTTCGAATTCATCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTC 1471999 Query 53651 CGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTT 53694 ||| ||||| || || ||| || || ||| | || |||||||| Sbjct 1472000 CGCGCTCGTGATCTTTTCTAC-GCCCTCTGGGTACCCGACCTCTT 1472043 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||||| ||| ||| ||| || |||||||| | ||||||| | ||||| | | Sbjct 1473209 TCAAGGCGATCTACAAGACCGTTTGGGAGATCTCGCAGAAGAAGGTCCTTGACCTCGCCG 1473268 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | |||||||| |||| |||| |||||| ||||| || || || | | || || Sbjct 1473269 CGGATCGTGGAGCGTTCATCTGCCAGTCGCAGTCGCTCAATGTCCACCTCCAGTCCCCCA 1473328 Query 55848 C-ACTGGCCAAGTT--GAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | || ||||| | |||| |||||||| ||||| ||||||||||| || ||||||| Sbjct 1473329 CCACGGGCCAGCTCACGAGC---ATGCACTTCTACGGCTGGAAGAAGGGCCTGAAGACGG 1473385 Query 55905 GTATGTACTATCTGCGGACCCG 55926 | |||||||| ||||| || || Sbjct 1473386 GCATGTACTACCTGCGCACGCG 1473407 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/259 (69%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 53179 GCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGT 53238 ||| || |||| ||||||| || || | || |||||||| || || | || | Sbjct 1471470 GCCACAACATCTCATCATGCGTGTGGCTGTTGGCATCCACGGAGAAGATATCGACCGCGC 1471529 Query 53239 CCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTT 53298 |||||| ||| || | ||| | | ||||| || || || ||||||||||||| Sbjct 1471530 AATTGAGACTTACCACCTCATGTCCGAGCGATACTTCACACATGCGTCGCCAACCCTGTT 1471589 Query 53299 CAACGCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAAGGA 53355 ||| || || || |||| ||| | |||| ||||| ||||| | |||||||| Sbjct 1471590 CAATGCCGGAACCCCCAACCCGCAGCTC---AGCTCATGCTTCTTGGTGTCCATGAAGGA 1471646 Query 53356 TGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTC 53415 |||||| ||||| || |||||| |||||| ||||| || || ||| |||| | | Sbjct 1471647 TGACTCTATCGAGGGTATCTACTCGACGCTAAAGGACTGCGCGATGATCAGCAAGACGGC 1471706 Query 53416 GGGTGGTATCGGTATCCAC 53434 ||||| ||||| ||| || Sbjct 1471707 TGGTGGGATCGGCATCAAC 1471725 >seq85 Length=120479 Score = 91.5 bits (100), Expect = 2e-13 Identities = 172/249 (69%), Gaps = 13/249 (5%) Strand=Plus/Minus Query 124591 CGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCCGAGCT-------CGATTGGCTTGGCC 124643 |||| |||||||| |||||||| || ||||| ||||| | ||| || |||| || Sbjct 102073 CGTGTCCCCAGTCACGCTTGGCGTCGAGGTTGCCGAGGTACAGGCACGACTG-CTTGCCC 102015 Query 124644 GTCTTGTTCCACTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAAC-TCGGAACCGCG 124702 | | | | ||| || | | |||||||| || || ||| || | ||||| Sbjct 102014 AGGGAGATGTCCGCGGCCGCACGC---GAGATCTTGCGGGTGACGAACGTCCGC-CCGCG 101959 Query 124703 TCGCTCAGACTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCG 124762 ||| ||||||||||||||||| || || | ||||| |||| ||||||| |||||| Sbjct 101958 GCGCGGCGACTCGTGGTTGAACAGGATCCCGTTGCACGCGTACATGCCGTACGCCTCGCG 101899 Query 124763 GTAGTTTTTCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTA 124822 |||||| | ||||| |||| | ||||| | |||||| || || || ||||| Sbjct 101898 GTAGTTGACCACGATCCAGAACCCGTACAGCTTCGCCACGCCGTATGGCGAGCGCGGGTA 101839 Query 124823 GAATGGGGT 124831 ||| || || Sbjct 101838 GAACGGCGT 101830 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||| | | |||||||| || ||||| | ||| |||||||| || || ||| Sbjct 102226 AACTCGCGCACGGGATGCGTCTCGCCCGTCGCGAGCACGAAGTCCTCCGGCGCGTCCTGC 102167 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGC 159041 || ||||| ||||||||| ||||||||||||| |||| Sbjct 102166 TGCAGCATCAGCCACATGCCCTCGACGTAATCGCGCGC 102129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213906898800