Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4 170 2e-37 seq29 167 3e-36 seq2 109 6e-19 seq85 87.8 2e-12 seq13 84.2 2e-11 seq9 84.2 2e-11 >seq4 Length=1487122 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||||||||| Sbjct 24288 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCGTCG 24229 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || |||||||||||||| || || || |||||| Sbjct 24228 GACACCATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 24169 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| |||||||||| ||| || | ||||||| || Sbjct 24168 CAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACGTTGTCAGACTACAAC 24109 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| || |||| || || || || Sbjct 24108 ATCCAGAAGGAGTCCACCCTCCATCTCGTTCTGCGCCTCCGTGGCGG 24062 Score = 156 bits (172), Expect = 5e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||| | ||||||||||| || || || ||||| ||||| | Sbjct 24060 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACGATCACGCTGGAGGTCGAGTCTTCT 24001 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || |||||||| ||||||||||| || ||||||||| Sbjct 24000 GACACCATCGACAACGTCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCGCCAGACCAG 23941 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| ||| || | | ||||| || Sbjct 23940 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACGTTGTCGGACTACAAC 23881 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || || ||||| || Sbjct 23880 ATCCAGAAGGAGTCTACCCTTCACCT 23855 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| || || ||||| ||||| || ||||||||||| Sbjct 23551 ATGCAGATCTTCGTCAAGACGCTCACAGGGAAGACCATTACGCTGGAGGTTGAGTCCTCG 23492 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 23491 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAG 23432 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| ||||| | ||||| | || || || | ||||| || Sbjct 23431 CAACGTCTTATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCCGACTACAAC 23372 Query 27586 GTCCAAAAGGAATCCACTCTTCATCT 27611 |||| ||||| || || ||||| || Sbjct 23371 ATCCAGAAGGAGTCGACGCTTCACCT 23346 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||||||||| || |||||||| || || | ||||| ||||| Sbjct 23779 ATGCAAATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCTTGGAGGTCGAGTCTTCC 23720 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || || ||||||||||| || ||||| |||||| Sbjct 23719 GACACGATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 23660 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| | ||||| | ||||| || | ||||| || Sbjct 23659 CAGCGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGTACTCTGTCGGACTACAAC 23600 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| ||||| | ||| | ||||| |||||||| Sbjct 23599 ATTCAGAAGGAGTCCACGCTTCACTTGGTCCTTCGTCTGCGCGGTGG 23553 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || ||||| ||||||||||| || || || || || ||||| |||||||| | || || Sbjct 24411 ATCCCTCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACG 24352 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || | ||||| || |||| ||||| ||||| ||||| || ||| | ||||| || || Sbjct 24351 CTGTCTGACTACAACATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGTCTCCGTGGC 24292 Query 27631 GG 27632 || Sbjct 24291 GG 24290 >seq29 Length=419596 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||||||||| ||||||||||| || || | ||||| ||||| Sbjct 160980 ATGCAGATCTTCGTCAAGACGCTCACCGGCAAGACGATCACGTTGGAGGTCGAGTCTTCG 161039 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || || |||||||||||||| || || || |||||| Sbjct 161040 GACACGATCGATAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAG 161099 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||| | ||||| || | ||||| || Sbjct 161100 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACGCTCTCGGACTACAAC 161159 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||| ||||| || ||| | ||||| |||||||| Sbjct 161160 ATCCAGAAGGAGAGCACCCTTCACCTCGTCCTTCGTCTCCGCGGTGG 161206 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||||||||| || || || ||||| ||||| Sbjct 160752 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 160811 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || ||||| ||||||||||| ||||| || |||||| Sbjct 160812 GACACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATTCCGCCCGACCAG 160871 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | ||||| || || ||||| |||||||||| || || || | ||||| || Sbjct 160872 CAGCGCTTGATTTTCGCAGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGACTACAAC 160931 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | ||||||||||| || Sbjct 160932 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGTCTTCGCGGAGG 160978 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| |||||||||||||| || || || ||||| ||||| Sbjct 160419 ATGCAGATCTTCGTGAAGACCCTTACCGGCAAGACCATCACGCTCGAGGTCGAGTCCTCG 160478 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 |||| ||||| ||| | ||||| || || |||||||||||||| Sbjct 160479 GATACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGG 160522 >seq2 Length=1603695 Score = 109 bits (120), Expect = 6e-19 Identities = 117/152 (77%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 80035 CGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATA 80094 ||||| ||||| ||||||||||||||||| |||||||||||||||||||| | |||||| Sbjct 1473407 CGCGTGCGCAGGTAGTACATGCCCGTCTTCAGGCCCTTCTTCCAGCCGTAGAAGTGCATG 1473348 Query 80095 GAACTGAGCTTCGCAAGT-GTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACA 80153 ||||| | || || |||||| || | | || || || ||||| ||||| || Sbjct 1473347 CTCGTGAGC-TGGCCCGTGGTGGGGGACTGGAGGTGGACATTGAGCGACTGCGACTGGCA 1473289 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAA 80185 |||||| || |||||||| || || | |||| Sbjct 1473288 GATGAACGCTCCACGATCCGCGGCGAGGTCAA 1473257 >seq85 Length=120479 Score = 87.8 bits (96), Expect = 2e-12 Identities = 220/338 (65%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 24585 GAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTAC 24644 ||||| || ||||| || || ||||| ||||||||| | || || || | |||||| Sbjct 101629 GAGGTGTACAACCTCGGCGCGCAGTCGCACGTCAAGGTCTCCTTCGAGATGGCGGAGTAC 101688 Query 24645 ACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNNN 24704 |||| | |||| || | || ||||| || | | || || || || || Sbjct 101689 ACGGGCGACGTCGACGGCCTCGGCACGCTGCGCCTGCTCGACGCGATCCGGACGTGCGGG 101748 Query 24705 NNNNNNTTGAAATTCA---GATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTG 24761 |||| | | || || |||||| ||| ||| ||| |||||||| Sbjct 101749 CTCGA---GAAACACGTGCGGTTCTACCAGGCGTCGACGTCGGAGCTGTACGGCAAGGTC 101805 Query 24762 CAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCA 24821 |||||||| ||| ||||| || || || || ||||| || || || || | Sbjct 101806 GTCGAGACGCCGCAGAGCGAGACGACGCCGTTCTACCCGCGCTCGCCATACGGCGTGGCG 101865 Query 24822 AAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGC 24881 ||| ||| || || |||||| |||||||| ||||| | || || || || ||| Sbjct 101866 AAGCTGTACGGGTTCTGGATCGTGGTCAACTACCGCGAGGCGTACGGCATGTACGCGTGC 101925 Query 24882 AACGGAATTCTGTTCAACCATGAGTCGGAGCGTCGGGG 24919 ||||| || ||||||||||| |||||| ||| || || Sbjct 101926 AACGGGATCCTGTTCAACCACGAGTCGCCGCGCCGCGG 101963 >seq13 Length=709687 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || |||||||||||||| || || ||||| ||||| |||||||| | |||||| Sbjct 148094 ATCCCCCCCGACCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGTACC 148035 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || ||| ||||| || |||| ||||| ||||| || || || || Sbjct 148034 CTCAGC-GACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGT 147991 >seq9 Length=891578 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || || ||||||||||| || || || || || ||||| |||||||||| || ||| Sbjct 319804 ATCCCCCCCGACCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACC 319863 Query 27571 CT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGG 27629 || ||| ||||| || |||| ||||| ||||| || || || || | || ||||| || Sbjct 319864 CTCAGC-GACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTTCGTGG 319922 Query 27630 TGG 27632 ||| Sbjct 319923 TGG 319925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570308218562720