Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq29 93.3 3e-14 seq4 86.0 4e-12 >seq29 Length=419596 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||||||||||| || ||||| || || || || || || |||| || || || Sbjct 161182 TGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGGCCGTCCTCGAGCTGC 161123 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | ||||| ||||| ||||| | ||||||||||| |||| || Sbjct 161122 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGGATC-TT 161064 Query 34624 TGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || || || || ||||| ||| || |||| || ||||| || ||||| Sbjct 161063 CGCCTTCACATTATCGATCGTGTCCGAAGACTCGACCTCCAACGTGATCGTCTTGCCGGT 161004 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | ||| || || || ||||||||| Sbjct 161003 GAGCGTCTTGACGAAGATCTGCATG 160979 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| | || | ||||| || |||||| || ||||| || || || Sbjct 160979 GCCTCCGCGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 160920 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | || || || || || || || || || || ||||| ||||| ||||| Sbjct 160919 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGCTGGTCGGGCGG 160860 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| || | || ||| | || ||||| ||| | Sbjct 160859 AATGCCCTCCTTGTCT-TGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGA 160801 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || ||||| || || || ||||| |||||||| Sbjct 160800 CCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 160752 >seq4 Length=1487122 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| |||||| |||||||| || || || || || || Sbjct 23562 AGACGAAGGACCAAGTGAAGCGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGT 23621 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || ||||| || || || ||||| ||||| || || | |||||| Sbjct 23622 CCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCC 23681 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || ||||| ||| || |||| ||| Sbjct 23682 TTGTCTTGGATC-TTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCCAAGGT 23740 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | ||| || || || || ||||| Sbjct 23741 GATGGTCTTGCCCGTGAGCGTCTTGACGAAGATTTGCAT 23779 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||| || | |||||| ||| |||||| || ||||| || ||||| Sbjct 24062 CCGCCACGGAGGCGCAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAC 24121 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || || || || ||||| || || | |||||| ||||| ||||| Sbjct 24122 AACGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGG 24181 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | ||||| | || ||||| ||| || Sbjct 24182 ATGCCCTCCTTGTCCTGGATC-TTCGCCTTAACATTGTCGATGGTGTCCGACGACTCAAC 24240 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||| ||||| || || || | || || || || ||||||||| Sbjct 24241 CTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 24289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728426255298