Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq29 127 2e-24 seq4 113 4e-20 >seq29 Length=419596 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||||||| | || || || || || || ||||| Sbjct 160752 ATGCAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 160811 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||||||||| || ||||| || ||||| || Sbjct 160812 GACACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATTCCGCCCGACCAG 160871 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| ||||| || | || || | || |||| || |||||| Sbjct 160872 CAGCGCTTGATTTTCGCAGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGACTACAAC 160931 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || | ||| | ||| | || || ||||| Sbjct 160932 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGTCTTCGCGGAGGCAT 160981 >seq4 Length=1487122 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || |||||| | || || | || || || | ||| Sbjct 23779 ATGCAAATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCTTGGAGGTCGAGTCTTCC 23720 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || |||||||| || || || || || || || Sbjct 23719 GACACGATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 23660 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||||||| || ||||| ||| | || | || || |||||| Sbjct 23659 CAGCGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGTACTCTGTCGGACTACAAC 23600 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || ||||| | ||| |||| ||||| || Sbjct 23599 ATTCAGAAGGAGTCCACGCTTCACTTGGTCCTTCGTCTGCGCGGTGGTAT 23550 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | || || || || || || | || Sbjct 24060 ATGCAGATCTTCGTGAAGACGTTGACCGGCAAGACGATCACGCTGGAGGTCGAGTCTTCT 24001 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| || || || || || || || || || Sbjct 24000 GACACCATCGACAACGTCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCGCCAGACCAG 23941 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | ||||||||| || |||| || | ||| |||| || || ||||| Sbjct 23940 CAGCGTCTTATCTTCGCCGGCAAGCAGCTGGAGGA-TGGTCGCACGTTGTCGGACTACAA 23882 Query 27167 CATTCAAAAGGAGTCGACCTTACA-TTTGGT-TTTGCGTTTGCGGG 27210 ||| || |||||||| ||| | || ||||| | || ||||||| Sbjct 23881 CATCCAGAAGGAGTCTACCCTTCACCTTGGTAAGTACGCTTGCGGG 23836 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | ||||| || || || || | || Sbjct 23551 ATGCAGATCTTCGTCAAGACGCTCACAGGGAAGACCATTACGCTGGAGGTTGAGTCCTCG 23492 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || || || ||||| || || || || || || || Sbjct 23491 GACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAG 23432 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || || || ||||| ||| | || | ||||| |||||| Sbjct 23431 CAACGTCTTATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCCGACTACAAC 23372 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || ||||||||||| Sbjct 23371 ATCCAGAAGGAGTCGAC 23355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916736437120