Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6 87.8 2e-12 >seq6 Length=1235503 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 34256 GGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCG 34315 ||| | ||||||||||| || |||||||| || ||| || ||||| ||||||| Sbjct 27612 GGCATCGTCGAGGAGCTCCTCTGGTTCGTCCAAGGCTGCACAGACTCCAAGAAGCTCTCC 27671 Query 34316 TCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG 34375 | ||| | ||||||||||||| | || || ||||| || || ||||| || Sbjct 27672 GCAAAGGGCATCAAGATCTGGGACGGCAATGGCTCCAAGGACTTCCTCGAGAAGCGCGG- 27730 Query 34376 TTCCCA--TCTCGGGAG-GAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACAC 34432 || | | | | | || |||||| | ||||| || ||||| ||||||||| | ||| Sbjct 27731 --CCTAGGGCACAGACGCGAAGGCGACCTCGGCCCCGTTTACGGCTTCCAGTGGCGGCAC 27788 Query 34433 TTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTG 34492 || || ||| | || || |||| || |||||| | || |||| | |||||||| Sbjct 27789 TTCGGCGCGCAATACGAGGACTGCGACGCCGACTATACCGGCAAGGGCGTCGACCAGCTC 27848 Query 34493 CAG 34495 ||| Sbjct 27849 CAG 27851 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 6850 CTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCC 6909 ||| |||||||| | |||| || | |||||| || |||| || || | ||| || Sbjct 27851 CTGGAGCTGGTCGACGCCCTTGCCGGTATAGTCGGCGTCGCAGTCCTCGTATTGCGCGCC 27792 Query 6910 AAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTC-CTCCCGAGA--TGG 6966 ||||| | ||||||||| ||||| || ||||| | |||||| || | | | | | | Sbjct 27791 GAAGTGCCGCCACTGGAAGCCGTAAACGGGGCCGAGGTCGCCTTCGCGTCTGTGCCCTAG 27732 Query 6967 GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCG 7026 | || ||||| || || ||||| || || | ||||||||||||| | ||| Sbjct 27731 G---CCGCGCTTCTCGAGGAAGTCCTTGGAGCCATTGCCGTCCCAGATCTTGATGCCCTT 27675 Query 7027 GGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCAC 7086 | ||||||| ||||| || ||| || |||||||| || ||||||||||| | Sbjct 27674 TGCGGAGAGCTTCTTGGAGTCTGTGCAGCCTTGGACGAACCAGAGGAGCTCCTCGACGAT 27615 Query 7087 GCC 7089 ||| Sbjct 27614 GCC 27612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260685396320