Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4 168 2e-36 seq29 159 8e-34 seq9 89.7 1e-12 seq2 87.8 4e-12 >seq4 Length=1487122 Score = 168 bits (186), Expect = 2e-36 Identities = 162/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 |||||||||| || ||||| || |||||||| || || | || || | || || |||| Sbjct 23344 CAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCA 23403 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 |||||| || ||||||||||| ||||| ||||| || |||| || ||||||||||||| Sbjct 23404 ACTGCTTCCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGA 23463 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 |||| |||||||| ||||| ||||| ||| |||||||| || || || ||||| | Sbjct 23464 TCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCC 23523 Query 211087 CCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| || || | |||||| Sbjct 23524 CTGTGAGCGTCTTGACGAAGATCTGCAT 23551 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || |||||||| || |||||||| || || | | || | ||||| Sbjct 24077 AGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGACAACGTGCGACCATCC 24136 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||||||||| || || ||||| || || | || ||||||||| Sbjct 24137 TCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 24196 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || ||||||||||| ||||||||| Sbjct 24197 TGGATCTTCGCCTTAACATTGTCGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTC 24256 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 24257 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 24288 Score = 163 bits (180), Expect = 7e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 |||||||||| || ||||| || |||||||| || |||| | || | ||||| |||| Sbjct 23853 CAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCA 23912 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGA 211026 |||||||||| ||||||||||| || || ||||| || || | ||| ||||| ||||| | Sbjct 23913 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTGAA 23972 Query 211027 TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTC 211086 |||| || ||||| |||||||||||||| || ||||| || ||||||||||| | Sbjct 23973 TCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGC 24032 Query 211087 CCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || | ||||| || || | |||||| Sbjct 24033 CGGTCAACGTCTTCACGAAGATCTGCAT 24060 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| |||||||| || || ||||| || |||| || || | ||| || Sbjct 23568 AGGACCAAGTGAAGCGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGTCCGTCC 23627 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||| | ||| || ||||||||||| | || |||||||| Sbjct 23628 TCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCT 23687 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || ||||| | ||||| ||| Sbjct 23688 TGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCCAAGGTGATGGTC 23747 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | ||||| Sbjct 23748 TTGCCCGTGAGCGTCTTGACGAAGATTTGCAT 23779 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| || || || ||||||||||| ||| || |||||| Sbjct 24470 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCG 24529 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || ||||||||||| || || | |||||| Sbjct 24530 AGAGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 24573 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| |||||||| || |||||||| || || | || || | || || Sbjct 24305 AGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGCGTGCGGCCGTCC 24364 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 || ||||||||||| |||||||| ||||| || ||||| ||||| Sbjct 24365 TCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGAGG 24408 >seq29 Length=419596 Score = 159 bits (176), Expect = 8e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || ||||| || || ||||| || |||||||| || |||| ||| || Sbjct 160972 CGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 160913 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || ||||||||||||||||| || | ||| || ||||| || |||| || Sbjct 160912 CGGCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGCTGGTCGGGCGGAATGCCC 160853 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || ||||| || ||||| ||||||||||| || || |||||||| Sbjct 160852 TCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGG 160793 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | ||||| ||||| | |||||| Sbjct 160792 GTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 160752 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| ||| ||| || |||||||| || |||| || || | || || Sbjct 161191 AGGACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGGCCGTCC 161132 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 161131 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC 161072 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||| ||||| || || ||||| | ||||||||| Sbjct 161071 TGGATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCGACCTCCAACGTGATCGTC 161012 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 161011 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 160980 >seq9 Length=891578 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || |||||||| |||||||| || || || ||||||||||| ||| ||||||||| Sbjct 319744 CCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCG 319685 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| || || | |||||| Sbjct 319684 AGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 319641 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| || |||||||| || |||||||| || || ||||| Sbjct 319920 ACGAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGT 319861 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 | ||||| || ||||||||||| |||||||| ||||| || ||||| || || Sbjct 319860 GCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGG 319807 >seq2 Length=1603695 Score = 87.8 bits (96), Expect = 4e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 178160 TGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCT 178219 |||||| | || || || ||| |||| ||| ||| || ||||| ||| | ||| Sbjct 1472274 TGAGCCTCCAGGATCGCATACCAGAGCTTCTGAGCTTCGATGGTCTTCTTGCCGCGGCCT 1472215 Query 178220 TCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCG 178279 || |||||||| | |||||| |||||||||| ||| | || || | ||||||| Sbjct 1472214 TCGCGCTCGTACTGCTCATAGAGCCTCTCGAATTCCTCTCCCCAAACCTCGTGGAGACCG 1472155 Query 178280 GGAGCCTCATTGGGGCAGAAGAGACTCCACT 178310 || ||||||||||||||||| || |||||| Sbjct 1472154 GGCGCCTCATTGGGGCAGAACAGTGTCCACT 1472124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159147455399690