Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4 116 3e-21 >seq4 Length=1487122 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| ||||| || || Sbjct 24288 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCGTCG 24229 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || || ||||| || || | ||||| || || Sbjct 24228 GACACCATCGACAATGTTAAGGC-GAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 24170 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || || | ||||| || || ||||| Sbjct 24169 GCAGCGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACGTTGTCAGACTACAA 24110 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || || |||||||| | ||| | ||| Sbjct 24109 CATCCAGAAGGAGTCCACCCTCCATCTCGTT 24079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338008339435448