Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4 152 1e-31 seq29 134 3e-26 >seq4 Length=1487122 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || || ||||| ||||| || || |||| ||||| || | ||| || Sbjct 24067 ACGGAGGCGCAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGACAACGT 24126 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || ||||||||||| || || ||||||||||| || || Sbjct 24127 GCGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCC 24186 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | || || || | Sbjct 24187 CTCCTTGTCCTGGATCTTCGCCTTAACATTGTCGATGGTGTCCGACGACTCAACCTCGAG 24246 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||||||||| | || || | ||| | ||||| Sbjct 24247 GGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 24288 Score = 136 bits (150), Expect = 9e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || || || || || |||| ||||| || | ||| || | ||||| || | Sbjct 23853 CAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCA 23912 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||| || ||||||||||| || || ||||| ||||| || || ||||| || || | Sbjct 23913 GCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTGAA 23972 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| ||| || ||||||||||| || | || || || | |||||||||||||| Sbjct 23973 TCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGC 24032 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || | ||| | ||||| Sbjct 24033 CGGTCAACGTCTTCACGAAGATCTGCAT 24060 Score = 127 bits (140), Expect = 5e-24 Identities = 153/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 225506 CAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTA 225565 ||||||| || || || || || |||| ||||| |||| | || | || || || | Sbjct 23344 CAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCA 23403 Query 225566 GCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGA 225625 ||||||||||||||||||||| ||||| ||||| || ||||| || |||||||| |||| Sbjct 23404 ACTGCTTCCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGA 23463 Query 225626 TCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 |||| |||||| ||||| ||||| |||| || || || | ||| || ||||| | Sbjct 23464 TCTTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCC 23523 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || | || || | ||| | ||||| Sbjct 23524 CTGTGAGCGTCTTGACGAAGATCTGCAT 23551 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || ||||| || || || | ||||| || | || ||| | || || Sbjct 23568 AGGACCAAGTGAAGCGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGTCCGTCC 23627 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || |||||||| | || || ||||| || || ||||| ||||||||| Sbjct 23628 TCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCT 23687 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | || || || || ||||| ||| Sbjct 23688 TGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCCAAGGTGATGGTC 23747 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | |||||| Sbjct 23748 TTGCCCGTGAGCGTCTTGACGAAGATTTGCAT 23779 >seq29 Length=419596 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||| || || |||| ||||| || | | || | || || Sbjct 161191 AGGACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGGCCGTCC 161132 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||||||||| ||||| |||||||| Sbjct 161131 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC 161072 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||| ||||| || | || || || |||||||||||| Sbjct 161071 TGGATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCGACCTCCAACGTGATCGTC 161012 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 161011 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 160980 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || |||||||| || || || || |||| ||||| || | | ||| Sbjct 160972 CGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 160913 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || ||||| || | || || |||||||||||||| || Sbjct 160912 CGGCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGCTGGTCGGGCGGAATGCCC 160853 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| ||||| ||| || ||||||||||| || | || || || | Sbjct 160852 TCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGG 160793 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| |||||||| ||||| || || Sbjct 160792 GTGATGGTCTTGCCGGTCAAGGTCTT 160767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192526524532364