Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6 131 1e-25 >seq6 Length=1235503 Score = 131 bits (144), Expect = 1e-25 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30074 |||| |||| ||||||||| ||||| || || || ||||| || || |||||| | | Sbjct 27792 CGAAGTGCCGCCACTGGAAGCCGTAAACGGGGCCGAGGTCGCCTTCGCGTCTGTGCCCTA 27733 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 ||| | ||| || | ||||| |||| || ||| ||||||||||||| | ||||| Sbjct 27732 GGCCGCGCTTCTCGAGGAAGTCCTTGGAGCCATTGCCGTCCCAGATCTTGATGCCCTTTG 27673 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGA 30191 ||||||||| ||||||| |||| | ||| ||||||||| || |||||||| |||| Sbjct 27672 CGGAGAGCTTCTTGGAGTCTGTGCAGCCTTGGACGAACCAGAGGAGCTCCTCGACGA 27616 Score = 131 bits (144), Expect = 1e-25 Identities = 206/295 (70%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 29528 GGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 29587 ||||| |||||||||||||||| | || ||||| | |||||||| | |||||| Sbjct 28359 GGGTGCGGGTCGTAGCCCTCCACGACAAAGTCCTCGCTCCGGAAGTCGTCGATGCTCTCG 28300 Query 29588 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTC 29647 ||| | | ||| || | || || || | ||||| | ||||||||| |||| Sbjct 28299 ACCGTGCGCGGCCACCTGAGCTTCGGGAACGGGCGCGGCTCGCGCTCGAGCTGGGTCCTG 28240 Query 29648 AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCC 29707 |||| || |||||||| |||||||||| || || || || | || | ||| | Sbjct 28239 AGCGCGTCGACGTGGTCGCGGTAGACGTGCGCGTCGCCGAGCTGGATCACGAGCTCGTGC 28180 Query 29708 GGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTA 29767 || | |||||||||| || | ||||| ||||||||| | |||| ||||||||| Sbjct 28179 GGGACGGTGTCGGTGACGTGGGCGACCATGTGCGTGAGGAGGGCGTAGGAGGCGATGTTG 28120 Query 29768 AAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCT 29822 ||||| | |||||||| | ||| | || | |||||| | |||| ||||||| Sbjct 28119 AAGGGGATGCCGAGCCCGAGGTCGGCGGAGCGCTGGTACATGAGGCAGGAGAGCT 28065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406161685265116