Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 5e-15 >seq8 Length=958091 Score = 96.9 bits (106), Expect = 5e-15 Identities = 331/515 (64%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || ||||| || ||||| | ||||| || |||||||| || || | ||| Sbjct 469631 TCGTTGGAGAACGTGAGGCCAGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAGGCG 469572 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || |||||||| ||||| || || || || || || || ||| | || | ||| || | Sbjct 469571 AAGGATCCAGAGAAGAAGATACCCTCCACAGCGGCGAAGGCGATGAGACGCTCGGCGAAC 469512 Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | || |||| ||||| || | ||||| || ||||||||||| | ||||| Sbjct 469511 GCAGACTCCTTGTCGGAAATCCAGCGAAGAGCCCAGTCGGCCTTCTTCTTGATGCAAGGA 469452 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCT 48419 || || || || || | ||||| | | | | || || | ||| ||||| Sbjct 469451 ATGGTGTCGATGGCGTCGAAGAGGTGCTCGCGCTGAGCGGGGTCCTTGATGTAGGTATCA 469392 Query 48420 ATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAA 48479 || | || || | || ||||| || || || || ||||| || ||||| || Sbjct 469391 ATGAGGAGCGAGTAGGTCTCCGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAG 469332 Query 48480 CATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACT 48539 || | |||||| | ||| ||||| | |||| | || | | ||||| || || Sbjct 469331 CAGCGCGCTTCCGCTGCCTGAACCTCGTTGGAAAACCTCTCGACGAGGTTCTCGTTGACG 469272 Query 48540 ATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATAT---TTTTCGTTG 48596 || || || || || || ||||| | || || ||| || ||| | |||| | Sbjct 469271 ATGCCGTCCGACGCGGCGAAGAATGCGAGGACGTGCGAAATGAAGTATCGCTCATCGTCG 469212 Query 48597 GAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAA 48656 | | || |||||||| | | ||| || || | || | || || || ||||| Sbjct 469211 GTGAGCTTGTTGTTCCAGTCGTGCAGATCCTTGGACAAGTCCATCTCCTCTGCCGTCCAG 469152 Query 48657 AATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || || ||||| || || || ||||| | ||| || Sbjct 469151 AAGGACGCCTCAGCCTTCTTGTACATCTGCCAGAT 469117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666142891840