Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq29 181 2e-40 seq4 178 3e-39 seq8 113 9e-20 seq13 98.7 2e-15 seq9 98.7 2e-15 >seq29 Length=419596 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || ||||| || || || | ||||| || || |||||||||||||| | Sbjct 161207 ACCACCGCGGAGACGAAGGACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGA 161148 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| ||||| ||||| || || || ||||| ||||| | || || ||||| ||| Sbjct 161147 GAGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 161088 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| || || || ||||||| |||||||||| ||||| Sbjct 161087 GATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCGAC 161028 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| || || | ||||| ||||| |||||||| Sbjct 161027 CTCCAACGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 160980 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || ||||| || || || | || || || |||||||||||||| | | Sbjct 160978 CCTCCGCGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 160919 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || || || ||||| || || ||||| |||| Sbjct 160918 AGAGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGCTGGTCGGGCGGA 160859 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||| ||||| || || ||| | ||||| ||||| || | ||||| Sbjct 160858 ATGCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACC 160799 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 160798 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 160752 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || || | || || || ||||| | ||||| ||| Sbjct 160522 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTATCCGAGGACTCGACCTCG 160463 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 160462 AGCGTGATGGTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCAT 160419 >seq4 Length=1487122 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || || ||||| | ||| || || |||||||||||||| | Sbjct 24061 ACCGCCACGGAGGCGCAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGA 24120 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||| |||||||| || || || ||||| ||||| | ||| || ||||| ||| Sbjct 24121 CAACGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGG 24180 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || || | ||||| |||||||| | || || Sbjct 24181 GATGCCCTCCTTGTCCTGGATCTTCGCCTTAACATTGTCGATGGTGTCCGACGACTCAAC 24240 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 24241 CTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 24288 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| ||||| |||| || | |||| || || || ||||||||||| | Sbjct 23552 ACCACCGCGCAGACGAAGGACCAAGTGAAGCGTGGACTCCTTCTGAATGTTGTAGTCCGA 23611 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| | || || ||||| |||||||| || || |||||| || Sbjct 23612 CAGAGTACGTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGG 23671 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||||||||||||||| || || ||| | ||||| ||||| |||| ||||| Sbjct 23672 GATACCCTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGAC 23731 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| ||||| ||||| | ||||| ||||| || ||||| Sbjct 23732 CTCCAAGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAGATTTGCAT 23779 Score = 159 bits (176), Expect = 7e-34 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | | |||||| |||||||| || || || ||||| ||| Sbjct 23870 TCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAG 23929 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || ||||| ||| || |||||||| || || ||||| || || ||| | Sbjct 23930 ATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTGAATCTTGGCCTTGACGTTG 23989 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| |||| ||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 23990 TCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCCGGTCAACGTCTTCACG 24049 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 24050 AAGATCTGCAT 24060 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | ||||||||||| ||||| | || ||||| || ||| Sbjct 23361 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAACTGCTTCCCAGCGAAG 23420 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | |||||| ||||| ||||| ||||||||||| |||||||| || || ||| | Sbjct 23421 ATAAGACGTTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTG 23480 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| |||||||| | || || || || || || ||||| || || | ||||| ||| Sbjct 23481 TCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCCCTGTGAGCGTCTTGACG 23540 Query 283089 AATATCTGCAT 283099 || |||||||| Sbjct 23541 AAGATCTGCAT 23551 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || || | ||||| ||||| || | ||||| ||| Sbjct 24470 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCG 24529 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||||| ||||| || || | |||||| ||||| |||||||| Sbjct 24530 AGAGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 24573 >seq8 Length=958091 Score = 113 bits (124), Expect = 9e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 || ||||||||||| | | |||||| | ||||| ||||| ||||| || ||||| | Sbjct 469838 CTCATCGGCATGAACTCGAAGCTCATGTGCCAATACATCGAGTTCGTTGCGGATCGCCTC 469897 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 |||| || || || |||||| || ||| || ||||||||||| ||| ||||| Sbjct 469898 CTCGTCGCTCTCGGCGGCGAGAAGCACTACAACGTCACGAACCCCTTCGATTTCATGGAC 469957 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTC 230387 | || || |||||||| || || ||||||||||| ||||||||| Sbjct 469958 ATGATCTCGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTC 470002 >seq13 Length=709687 Score = 98.7 bits (108), Expect = 2e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 ||||||||||| |||||||| || || || | ||||||||||| |||| || || || Sbjct 148148 CCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATAGTGTCGGAAGACTCCACCTCA 148207 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 || ||||| ||||| ||||| | ||||| ||||| |||||||| |||| Sbjct 148208 AGGGTGATGGTCTTCCCCGTAAGGGTCTTGACGAAGATCTGCATCTTCA 148256 >seq9 Length=891578 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 282996 CCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCG 283055 |||||||||||||||||||| || || || | ||||| |||||||| | || || ||| Sbjct 319744 CCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCG 319685 Query 283056 AGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 319684 AGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAAATCTGCAT 319641 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||| || || |||||||||||||| Sbjct 319926 ACCACCACGAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 319867 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || |||||||||||||| || || || || || ||||||| || || ||||| Sbjct 319866 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 319813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046735096128124