Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq29 149 5e-31 seq4 147 2e-30 >seq29 Length=419596 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||||||||||| ||||||||||| || | ||| || |||| || Sbjct 161188 ACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTACGGCCGTCCTCG 161129 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | |||||||| || | || | ||| ||||| ||| Sbjct 161128 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGG 161069 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||||| | | || ||||| | || || ||||||| ||| |||||||| Sbjct 161068 ATCTTCGCCTTCACATTATCGATCGTGTCCGAAGACTCGACCTCCAACGTGATCGTCTTG 161009 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| ||||| |||||||| |||||| Sbjct 161008 CCGGTGAGCGTCTTGACGAAGATCTGCATG 160979 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || | || ||| | || || Sbjct 160960 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCG 160901 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || || ||||| |||||||| || | || | || ||||| || Sbjct 160900 AGCTGCTTGCCTGCGAAAATCAAGCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCTTGA 160841 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | |||||||||| || || ||||| | || || ||||| Sbjct 160840 ATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 160781 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | |||||| || ||||| ||||| Sbjct 160780 CCGGTCAAGGTCTTGACAAAGATCTGCAT 160752 >seq4 Length=1487122 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 ||||||||||| |||||| ||||||||||| |||| ||| ||| |||| |||| | Sbjct 23346 AGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAAC 23405 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 |||||||| || ||||| | ||| ||||| || | || | || ||||| ||| ||| Sbjct 23406 TGCTTCCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATC 23465 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 ||| ||||| | | || ||||| | ||| || ||||||| |||||| ||||| || Sbjct 23466 TTCGCCTTCACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCCCT 23525 Query 44312 GTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| ||||| |||||||| ||||| Sbjct 23526 GTGAGCGTCTTGACGAAGATCTGCAT 23551 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||||||| |||||| || |||||||| || | || || |||| ||| Sbjct 23571 ACCAAGTGAAGCGTGGACTCCTTCTGAATGTTGTAGTCCGACAGAGTACGTCCGTCCTCC 23630 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| ||||| |||||||| |||||||| || | ||| | ||| ||||| || Sbjct 23631 AACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGG 23690 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | || ||||||| || || ||||||| || || ||||| Sbjct 23691 ATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGACCTCCAAGGTGATGGTCTTG 23750 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| ||||| |||||||||||||| Sbjct 23751 CCCGTGAGCGTCTTGACGAAGATTTGCAT 23779 Score = 125 bits (138), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| ||||||||||| || | | ||| | || || Sbjct 24080 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGACAACGTGCGACCATCCTCG 24139 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||| | ||||||||| || | || | || ||||| ||| Sbjct 24140 AGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 24199 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||| | || || ||||| | || ||||||| Sbjct 24200 ATCTTCGCCTTAACATTGT--CGATGGTGTCCGACGACTCAACCTCGAGGGTGATCGTCT 24257 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | |||||||||||||| |||||||| |||||| Sbjct 24258 TGCCCGTGAGGGTCTTGACGAAGATCTGCATG 24289 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 44132 AGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGC 44191 |||||||| || |||||| ||||||||||| || | | ||| | || |||||| Sbjct 23855 AGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCAGC 23914 Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| ||||| ||||| | ||||||||| |||| || | || ||||| ||| ||| Sbjct 23915 TGCTTGCCGGCGAAGATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCCTGAATC 23974 Query 44252 TTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCC 44311 || ||| | | | |||||||| | || || ||||||| ||| |||||||| || Sbjct 23975 TTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCCG 24034 Query 44312 GTGAGGGTCTTCACGAAGATTTGCAT 44337 || | |||||||||||||| ||||| Sbjct 24035 GTCAACGTCTTCACGAAGATCTGCAT 24060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989057460802