Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4 150 4e-31 seq29 125 2e-23 >seq4 Length=1487122 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || ||||||||||||||||| || || ||| Sbjct 24285 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTTGAGTCGTCGGAC 24226 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| |||||||| || || ||||| || |||||||| Sbjct 24225 ACCATCGACAATGTTAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAG 24166 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || |||||||| ||||| | || | | || || ||| || Sbjct 24165 CGTCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGTCGCACGTTGTCAGACTACAACATC 24106 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || || || || || ||||| ||| || | ||| Sbjct 24105 CAGAAGGAGTCCACCCTCCATCTCGTTCTGCGCCTC 24070 Score = 140 bits (154), Expect = 8e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || |||||||| || ||||| || || ||| Sbjct 24057 CAGATCTTCGTGAAGACGTTGACCGGCAAGACGATCACGCTGGAGGTCGAGTCTTCTGAC 23998 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||| || || |||||||| || |||||||| Sbjct 23997 ACCATCGACAACGTCAAGGCCAAGATTCAGGATAAGGAGGGAATCCCGCCAGACCAGCAG 23938 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||||| || ||||| | || | | || || ||| || Sbjct 23937 CGTCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACGTTGTCGGACTACAACATC 23878 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 23877 CAGAAGGAGTCTACCCTTCACCTTG 23853 Score = 131 bits (144), Expect = 4e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || |||||||| || || || || || ||||| || ||| ||| Sbjct 23548 CAGATCTTCGTCAAGACGCTCACAGGGAAGACCATTACGCTGGAGGTTGAGTCCTCGGAC 23489 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| |||||||| || || || || |||||||||||| Sbjct 23488 ACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAGCAA 23429 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||| | || || || | || || |||| || ||| || Sbjct 23428 CGTCTTATCTTCGCTGGGAAGCAGTTGGAGGACGGCCGCACGCTCTCCGACTACAACATC 23369 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 23368 CAGAAGGAGTCGACGCTTCACCTTG 23344 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || |||||| | ||||| || || ||| Sbjct 23776 CAAATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCTTGGAGGTCGAGTCTTCCGAC 23717 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || ||||| || || |||||||| |||||||| Sbjct 23716 ACGATCGACAACGTCAAGGCGAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAGCAG 23657 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || ||| | || || ||| | ||||| | || || ||| | Sbjct 23656 CGCTTGATCTTCGCCGGCAAGCAGTTGGAGGACGGACGTACTCTGTCGGACTACAACATT 23597 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 23596 CAGAAGGAGTCCACGCTTCA-CTTG 23573 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| |||||||| || || || ||||| |||||||| || ||| ||| Sbjct 24570 CAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGAC 24511 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGG 178024 |||||||| || ||||| ||||| |||||||| || || Sbjct 24510 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGG 24470 >seq29 Length=419596 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || | || || || || |||||||||||||| || || ||| Sbjct 160755 CAGATCTTTGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGAC 160814 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||| ||||| || || || || || |||||||| Sbjct 160815 ACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGCATTCCGCCCGACCAGCAG 160874 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || |||||||| ||||| | |||||| | || || ||| || Sbjct 160875 CGCTTGATTTTCGCAGGCAAGCAGCTCGAGGATGGCCGCACTCTTTCGGACTACAACATC 160934 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || || || || || || ||| Sbjct 160935 CAGAAGGAGTCGACCCTCCACCTCGTT 160961 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || |||||||| | ||||| || || ||| Sbjct 160983 CAGATCTTCGTCAAGACGCTCACCGGCAAGACGATCACGTTGGAGGTCGAGTCTTCGGAC 161042 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||||| |||||||| || || ||||| || |||||||| Sbjct 161043 ACGATCGATAATGTGAAGGCGAAGATCCAGGACAAGGAGGGTATCCCGCCCGACCAGCAG 161102 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || |||||||| || || | || || | || || ||| || Sbjct 161103 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACGCTCTCGGACTACAACATC 161162 Query 178104 CAAAAAGA 178111 || || || Sbjct 161163 CAGAAGGA 161170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203726480621364