Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20sp._20AH28-2_20[genbank_20GCA_5F001304625.1_202015-09-30] 306 sequences; 38,904,488 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq29 161 9e-35 seq4 140 3e-28 seq9 109 5e-19 seq13 96.9 3e-15 >seq29 Length=419596 Score = 161 bits (178), Expect = 9e-35 Identities = 176/230 (77%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || || || || |||||||||||||| ||||| ||||| ||| Sbjct 161206 CCACCGCGGAGACGAAGGACGAGGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGAG 161147 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| |||||||||||||||||||| || |||||||| ||||| | || Sbjct 161146 AGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 161087 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGA-CGACACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| || ||||| | | || | ||||| ||||| | Sbjct 161086 ATACCCTCCTTGTCCTGGATCTTCGCCTTCACATTATCG--ATCGTGTCCGAAGACTCGA 161029 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||| ||| ||||| || || || |||||||| ||||| ||||||||| Sbjct 161028 CCTCCAACGTGATCGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATG 160979 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||| | || || || || || ||||||||| ||||| ||||| || Sbjct 160979 GCCTCCGCGAAGACGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 160920 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || |||||||||||||| ||||| |||| |||||| ||||| | || Sbjct 160919 AAGAGTGCGGCCATCCTCGAGCTGCTTGCCTGCGAAAATCAAGCGCTGCTGGTCGGGCGG 160860 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||| | ||| | || || | ||| | | | |||||| |||||| | Sbjct 160859 AATGCCCTCCTTGT-CTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGACGACTCGA 160801 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || |||| ||||| || || |||||||| Sbjct 160800 CCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACAAAGATCTGCAT 160752 Score = 104 bits (114), Expect = 2e-17 Identities = 82/97 (85%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 41653 CACC-AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGT 41711 |||| || |||| ||| ||||||||||||||| ||||| |||||||||||| |||| | Sbjct 160681 CACCGAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGCCCGTCCT 160622 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 |||||||||| |||||||| || || ||||| ||||| Sbjct 160621 CGAGCTGCTTCCCGGCGAAGATGAGACGCTGCTGGTC 160585 >seq4 Length=1487122 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | || ||||| || ||| ||||||||| ||||| ||||| || Sbjct 24062 CCGCCACGGAGGCGCAGAACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAC 24121 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || |||||||||||||||||||| || || ||||| ||||| | || Sbjct 24122 AACGTGCGACCATCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCGGGCGGG 24181 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| || | || || | ||| | | | ||||| |||||| || Sbjct 24182 ATGCCCTCCTTGTCC-TGGATCTTCGCCTTAACATTGTCGATGGTGTCCGACGACTCAAC 24240 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || ||||| || ||||| || ||||| ||||| ||||||||| Sbjct 24241 CTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 24289 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| || |||||| ||||||||||||||| ||||| || Sbjct 23553 CCACCGCGCAGACGAAGGACCAAGTGAAGCGTGGACTCCTTCTGAATGTTGTAGTCCGAC 23612 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | ||||||||||||||| |||| |||||| ||||| | || Sbjct 23613 AGAGTACGTCCGTCCTCCAACTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGG 23672 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | || | || || | ||| | | | |||||| ||||| || Sbjct 23673 ATACCCTCCTTGT-CTTGGATCTTCGCCTTGACGTTGTCGATCGTGTCGGAAGACTCGAC 23731 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || ||||| |||||||| ||||| || ||||| Sbjct 23732 CTCCAAGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAGATTTGCAT 23779 Score = 136 bits (150), Expect = 4e-27 Identities = 156/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGC 41716 || || ||||| ||||||||| ||||| ||||||||||| ||||| |||| || | | Sbjct 23346 AGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCCAAC 23405 Query 41717 TGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATT 41776 ||||| || ||||| || || || || ||||||| ||||| | |||||||||| ||| Sbjct 23406 TGCTTCCCAGCGAAGATAAGACGTTGCTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATC 23465 Query 41777 TTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || |||| ||| | | | ||||| ||||| ||||||| ||| || || || || Sbjct 23466 TTCGCCTTC-ACGTTGTCGATCGTGTCCGAGGACTCAACCTCCAGCGTAATGGTCTTCCC 23524 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||||||| ||||| |||||||| Sbjct 23525 TGTGAGCGTCTTGACGAAGATCTGCAT 23551 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| || | ||||| | || || ||||||||||||||||| Sbjct 23869 CTCCTTCTGGATGTTGTAGTCCGACAACGTGCGACCATCCTCCAGCTGCTTGCCGGCGAA 23928 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| ||||| | || | | |||||| ||| ||| | || || | ||| Sbjct 23929 GATAAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTATCC-TGAATCTTGGCCTTGACGT 23987 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||||| ||||| ||||||| ||| ||||| || || |||| |||||| | Sbjct 23988 TGTCGATGGTGTCAGAAGACTCGACCTCCAGCGTGATCGTCTTGCCGGTCAACGTCTTCA 24047 Query 41850 CGAAAATCTGCAT 41862 |||| |||||||| Sbjct 24048 CGAAGATCTGCAT 24060 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || || || || ||| ||||||||| ||||| ||||| || Sbjct 24289 GCCGCCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 24348 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 || ||||| |||| |||||||||||||| ||||| ||||||||||| ||||| Sbjct 24349 CAGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTC 24402 >seq9 Length=891578 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||||| || || ||| ||||||||| ||||| |||||| | Sbjct 319925 CCACCACGAAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 319866 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||| ||||| ||||||||||| ||||| | ||| Sbjct 319865 AGGGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 319806 Query 41756 ACGCT 41760 | ||| Sbjct 319805 ATGCT 319801 >seq13 Length=709687 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || || || ||| ||||||||| ||||| |||||| |||||| || |||| || Sbjct 147990 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTACGGCCGTCCTC 148049 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCT 41760 |||||||||||| ||||| ||||| ||||| ||||| | ||| | ||| Sbjct 148050 GAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCGGGGGGGATGCT 148097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462302231687200