Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3392 217 2e-51 seq1820 152 5e-32 seq3359 127 2e-24 seq467 98.7 1e-15 seq611 87.8 2e-12 >seq3392 Length=91092 Score = 217 bits (240), Expect = 2e-51 Identities = 299/415 (72%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCC 117013 |||||||| || || ||||| |||| |||||||||||||||| || |||||| | Sbjct 44719 GCCATCGACACCATCCCGTGTATCAAGAAGAAGGCCGAGTGGGCTCTCAAGTGGATCACG 44660 Query 117014 GGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTC 117073 | || || |||||| ||||||||| | || ||||| |||||||||||| ||||| Sbjct 44659 GACACCCGATCCACCTTCGCCGAGCGCCTCATCGCTTTCGCTGCCGTCGAGGGCATCTTC 44600 Query 117074 TTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 || || ||| ||||| |||| || ||||| ||||| ||||||||||||||||| || Sbjct 44599 TTCTCCGGCTCGTTCGCGTCCATCTTCTGGCTGAAGAAGCGCGGCCTCATGCCCGGTCTT 44540 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTG 117193 || ||| ||||||||||||||| | ||||||||||| || ||||||||| || || Sbjct 44539 ACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTTCACACCGACTTTGCTTGCCTG 44480 Query 117194 CTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCG----CGTCAGGGAGATCGTCAC 117249 || |||| || | | || ||| | | | || |||| ||||| || Sbjct 44479 CTCTTCACCCACCT----CCGCCGCCGCCCTCATCCCGAGACCGTCGAAAAGATCATCCG 44424 Query 117250 CGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGG 117309 ||| || ||| ||||||||| ||||| || || || ||||| || || | || Sbjct 44423 CGAGGCCGTCAAGATCGAGCAGGAGTTCCTTACTGACGCCCTGCCCGTCTCGCTCATCGG 44364 Query 117310 ACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCT 117363 | || | |||||| |||| || ||||||||||||||||||||| | ||||| Sbjct 44363 CATGAACT-CGAAACTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCT 44310 >seq1820 Length=19797 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| |||||||| || ||||| |||||||| |||| |||||| | | Sbjct 366 ATGCAGATCTTCGTGAAAACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAATCATCT 425 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||| || | || |||||||| || || | ||||| Sbjct 426 GACACTATCGACAACG-TGAAGGCAAAGATCCAGGATAAAGAGGGTATTCCGCCTGACCA 484 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| ||||| ||| |||| |||| ||||||||| ||||||||| Sbjct 485 GCAACGTCTCATCTTCGCTGGCAAGCAGTTGGAAGACGGCCGCACCCTCTCCGACTACAA 544 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| | || || || || || | || | ||||||| Sbjct 545 CATCCAGAAAGAGTCGACCCTTCACCTTGTACTTCGACTTCGGGGCGG 592 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || |||||| |||| ||||| ||| | Sbjct 138 ATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACGATCACCCTCGAAGTCGAGTCCAGC 197 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| ||||||||||| | |||||| Sbjct 198 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 257 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| ||||| || || || |||| || || || ||| |||||| Sbjct 258 CAACGTCTCATCTTCGCTGGCAAGCAACTCGAGGACGGCCGTACACTTTCCGATTACAAC 317 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| || ||| |||| || || || ||| Sbjct 318 ATCCAAAAAGAGTCCACCCTCCACCTTGTG 347 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| || || || ||||| |||| || ||| | || Sbjct 594 ATGCAGATTTTCGTCAAAACTCTCACCGGGAAGACAATCACTCTCGAAGTTGAATCGTCC 653 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | || || | |||||||||||||||||| | || || Sbjct 654 GACACAATCGACAACG-TAAAAGCGAAGATCCAGGACAAAGAGGGCATCCCCCCTGATCA 712 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| || || || ||||| || || | || || || |||||||| Sbjct 713 GCAACGTCTCATCTTTGCCGGGAAGCAGCTTGAGGATGGACGAACTCTGTCGGACTACAA 772 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||| ||| | || || || || || |||| Sbjct 773 CATTCAGAAAGAGTCGACTCTTCACCTCGTCCTGCG 808 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 40789 GAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAG 40848 |||||||| ||| |||||||||| ||| | |||| ||| ||||| ||||| || || | Sbjct 968 GAGGGCATTCCCCCGGACCAGCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGATGGC 1027 Query 40849 CGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || | |||||||||||||||||||||| | || || || Sbjct 1028 CGCACTCTGAGCGACTACAACATCCAGAAGGAGTCTACACTTCA 1071 >seq3359 Length=24196 Score = 127 bits (140), Expect = 2e-24 Identities = 239/341 (70%), Gaps = 13/341 (4%) Strand=Plus/Minus Query 116669 TTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGG---GAGCGCTTG 116725 |||||||| | ||| ||| | || || | |||| || |||||| ||||| || Sbjct 4406 TTCTGGACTGCCGAAGAGCTTGATCTTGGACACGACATGAAGGACTGGACTGAGCGGCTG 4347 Query 116726 AACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGC 116785 | || || |||||| ||||| | | | |||||||| || || || ||||| Sbjct 4346 ACGGAGAATGAGCGCTTCTTCATTCTCCGCATCCTGGCCTTCTTTGCAGCATCAGACGGT 4287 Query 116786 ATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGG 116845 |||||| ||||||| | ||||||| ||| ||| ||||| ||| | ||||| || || Sbjct 4286 ATCGTCGGCGAGAATATCGTCGAGCAGTTCTCTCTCGAGGTCCAGATCGCCGAAGCTCG- 4228 Query 116846 TGC-TTCTACGGCTTTCAGATCGCC-ATGGAGAACGTGCACTCGGAAATGTATTCGACCC 116903 ||| ||||||| ||| ||| ||| |||||| | ||||| || |||| ||| || Sbjct 4227 TGCATTCTACGCCTTCCAG-TCGATGATGGAGCAAGTGCATTCCGAAACATATAGTCTCC 4169 Query 116904 TCATCGACACGTACGTGCGCTCTTCGGAGGAGAAG--CTCCGTTTGTTGAACGCCATCGA 116961 ||||||| |||||||| || ||| |||||||| || | | | || | ||| || Sbjct 4168 TCATCGAAACGTACGTCCGGGACTCGCAGGAGAAGGACTTCCTCTTCCGA--GGCATGGA 4111 Query 116962 GACGATGCCGTGCG-TCAAAGAGAAGGCCGAGTGGGCGCTG 117001 || || ||| ||| |||| |||||||||||||||| ||| Sbjct 4110 GAATATACCG-GCGATCAAGAAGAAGGCCGAGTGGGCACTG 4071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 117038 CGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATA 117097 ||||| || || || || || |||||| |||||||||| || ||||||||||| Sbjct 3994 CGCCTCGTTGCGTTTGCCTGTGTTGAGGGCATCTTCTTTTCCGGGTCATTCGCCGCCATC 3935 Query 117098 TTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCC 117157 || ||||||||||| | || || ||||| ||||| || ||| || ||||||||| | Sbjct 3934 TTCTGGCTCAAGAAGAGGGGTCTTATGCCAGGCCTCACCTTCTCGAATGAGCTCATCAGC 3875 Query 117158 AGGGACGAGGG 117168 | || ||||| Sbjct 3874 CGCGATGAGGG 3864 >seq467 Length=17913 Score = 98.7 bits (108), Expect = 1e-15 Identities = 118/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || || || || ||||||||| |||| || || || | |||| | | | |||| |||| Sbjct 10886 CTTACCGGGAAGACCATCACCCTCGAGGTGGAGTCCTCGGACACCATCGACAACG-TCAA 10944 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || || | ||||| |||||||||||| | ||||||||||| | |||| || || Sbjct 10945 GGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAACGGTTGATCTTTGCCGG 11004 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| ||||| || |||| ||||||||| ||||||| Sbjct 11005 CAAGCAGCTCGAGGACGGCCGCACCCTCTCGGACTACA 11042 >seq611 Length=5502 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAA 40761 || || || ||||||||||| ||||| ||| |||| |||||| | | ||||| | | Sbjct 351 GTCAAGACCCTCACGGGCAAGACCATTACCCTCGAAGTCGAATCGAGCGACACGATCGAC 292 Query 40762 ACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATC 40821 | |||| | || || | ||||| |||||||| || | |||||||| || | ||| Sbjct 291 AATGTCAAAGCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGCTTGATC 232 Query 40822 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||| ||||| ||||| || || | ||||| ||| ||||||| Sbjct 231 TTCGCCGGCAAGCAGCTTGAGGATGGCCGCACTCTCTCTGACTACA 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515196646279520