Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1820 131 1e-25 >seq1820 Length=19797 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||||||||| |||||||||||| | || || ||||| Sbjct 347 CACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGAAAGTGTACGGCCGTCCTC 288 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| || || |||||| |||||||||| ||||| || || || |||||||||||||| Sbjct 287 GAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 228 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| || |||||| |||| ||| | ||| || Sbjct 227 GATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATCGTCTT 168 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || || |||||||| Sbjct 167 GCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| ||||||||||| || || ||| || |||||| ||||| || || Sbjct 790 GTCGACTCTTTCTGAATGTTGTAGTCCGACAGAGTTCGTCCATCCTCAAGCTGCTTCCCG 731 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||||||||| |||||||| || || |||||||| ||||| || || ||| Sbjct 730 GCAAAGATGAGACGTTGCTGATCAGGGGGGATGCCCTCTTTGTCCTGGATCTTCGCTTTT 671 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | || || |||| || | || || ||||| |||||| Sbjct 670 ACGTTGTCGATTGTGTCGGACGATTCAACTTCGAGAGTGATTGTCTTCCCGGTGAGAGTT 611 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 610 TTGACGAAAATCTGCAT 594 Score = 107 bits (118), Expect = 2e-18 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||||||||| || || |||||||| ||||||| |||||| |||||| Sbjct 1078 CACCAAGTGAAGTGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTC 1019 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCC 118640 |||||| || || ||| |||| | |||||||| || || || ||||||||| Sbjct 1018 GAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCCGGGGGAATGCCCTCC 967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433811883847384