Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1820 132 3e-26 seq611 82.4 5e-11 >seq1820 Length=19797 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | || |||||||| |||||||||||||| Sbjct 592 CCGCCCCGAAGTCGAAGTACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 533 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||||||||||||| ||||| ||||| || |||||||| || Sbjct 532 AGGGTGCGGCCGTCTTCCAACTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGA 473 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| || || |||||| ||| | | | | || | || | |||||||| Sbjct 472 ATACCCTCTTTATCCTGGATCTTTGCCTTCACGTTGTCGATAGTGTCAGATGATTCGACC 413 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| |||||||| || |||||||| |||||||||||| Sbjct 412 TCGAGAGTGATGGTCTTGCCGGTAAGCGTTTTCACGAAGATCTGCATC 365 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||| ||||| | || ||||| || |||||||| ||||| Sbjct 364 CCACCGCGGAGACGGAGCACAAGGTGGAGGGTGGACTCTTTTTGGATGTTGTAATCGGAA 305 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || |||| |||| || | |||||||| ||||| ||||| || |||||||| | |||| Sbjct 304 AGTGTACGGCCGTCCTCGAGTTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGG 245 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | | || | ||| | || ||||| Sbjct 244 -ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGCTGGACTCGAC 186 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| || || || ||||| ||||||||||| Sbjct 185 TTCGAGGGTGATCGTCTTGCCAGTAAGGGTCTTCACGAAGATCTGCAT 138 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| || ||||| | ||| |||||||| ||||||||||| || Sbjct 821 TCCACCACGGAGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGA 762 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || | || || | |||||| || || || ||||| || ||||| || ||| Sbjct 761 CAGAGTTCGTCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGG 702 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| ||||| |||| | | | || | |||| |||||| || Sbjct 701 GATGCCCTCTTTGTCCTGGATCTTCGCTTTTACGTTGTCGATTGTGTCGGACGATTCAAC 642 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || |||||||||||||| || || |||||||| Sbjct 641 TTCGAGAGTGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCAT 594 >seq611 Length=5502 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 ||||||| || || ||| | || || | ||||||||| ||||| || | ||||||| Sbjct 186 TGTAGTCAGAGAGAGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCT 245 Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCG 34330 |||| || | || ||||||||| ||| || ||||| | || | | |||| ||| Sbjct 246 GGTCAGGAGGAATGCCCTCCTTGTCCTGGATC-TTGGCTTTGACATTGTCGATCGTGTCG 304 Query 34331 GTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 |||||||||| || | || ||||| ||||| ||||| || || || Sbjct 305 CTCGATTCGACTTCGAGGGTAATGGTCTTGCCCGTGAGGGTCTTGAC 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323058211085120