Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1820 109 5e-19 >seq1820 Length=19797 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||||| || |||||||| |||||||| || || | Sbjct 820 CCACCACGGAGACGCAGGACGAGGTGAAGAGTCGACTCTTTCTGAATGTTGTAGTCCGAC 761 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || ||||| || || ||| |||| |||||||||||||| || || Sbjct 760 AGAGTTCGTCCA-TCCTCAAGCTGCTTCCCGGCAAAGATGAGACGTTGCTGATCAGGGGG 702 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| ||| || ||||| | || | |||||||| | || || Sbjct 701 GATGCCCTCTTTGTCCTGGATCTTCGCTTTTACGTTGTCGATTGTGTCGGACGATTCAAC 642 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| ||||| | ||||| ||||| || |||||| Sbjct 641 TTCGAGAGTGATTGTCTTCCCGGTGAGAGTTTTGACGAAAATCTGCATA 593 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||||||||| ||||| |||||| | ||| | ||| ||||| || || ||| Sbjct 334 GTGGACTCTTTTTGGATGTTGTAATCGGAAAGTGTACGGCCGTCCTCGAGTTGCTTGCCA 275 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||||||||| || || || ||||| || ||||| ||| || || Sbjct 274 GCGAAGATGAGACGTTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 215 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||| ||| ||| || || | ||| | ||||||||| || | || Sbjct 214 ACATTGTCGATGGTGTCGCTGGACTCGACTTCGAGGGTGATCGTCTTGCCAGTAAGGGTC 155 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 154 TTCACGAAGATCTGCATA 137 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||||| || |||||||| || ||||| || ||| Sbjct 592 CCGCCCCGAAGTCGAAGTACAAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGGAG 533 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | ||| || ||||| |||| ||||||||||| || || || Sbjct 532 AGGGTGCGGCCGTCTTCCAACTGCTTGCCAGCGAAGATGAGACGTTGCTGGTCAGGCGGA 473 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || ||||| || ||| ||| || | | || | ||||| | | || ||| Sbjct 472 ATACCCTCTTTATCCTGGATCTTTGCCTTCACGTTGTCGATAGTGTCAGATGATTCGACC 413 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | |||||| ||||| || ||||| Sbjct 412 TCGAGAGTGATGGTCTTGCCGGTAAGCGTTTTCACGAAGATCTGCAT 366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496042284798400