Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3392 118 1e-21 >seq3392 Length=91092 Score = 118 bits (130), Expect = 1e-21 Identities = 177/251 (71%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| |||||||| || | || | |||||||| || || || Sbjct 44484 CAAGCAAAGTCGGTGTGAAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTAAGA 44543 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| ||||| ||||| || ||||| || || ||||| || || || || |||||| Sbjct 44544 CCGGGCATGAGGCCGCGCTTCTTCAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAG 44603 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATGT 42241 || || || || || || || || || || | ||| | | || | |||| Sbjct 44604 ATGCCCTCGACGGCAGCGAAAGCGATGAGGCGCTCGGCGAAGGTGGATCGGGTGTCCGTG 44663 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||||| ||||||| ||||||||||| || | ||| || || || || ||||| | Sbjct 44664 ATCCACTTGAGAGCCCACTCGGCCTTCTTCTTGATACACGGGATGGTGTCGATGGCCTCG 44723 Query 42302 AAGAGATAGTT 42312 ||||| ||||| Sbjct 44724 AAGAGGTAGTT 44734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671109820881520